Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02479 ATGACTGATGTTGTTGCTGAAACTTCTTGGTGTTTTGTTGTTCTTCCATGCTCCTCGTGGTCGCCATTTGGGTTTGCCATTCGGCCCCACGGTCAAACCTTGATCACGTCACTTTCTGCTCTTCCGTCTGCTTCTTCTTCTTCAGGACCGTCCGGCTGGTATCCGCTGCGACCGGCCGGTGATCTTCAAGTCTTGACCGGAGGGGGGAGGTACCTGAAAAGGCGCTCCGACGCTCAAGAATCACACGGCGGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTACAGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCACAGATTGCTTCATCTGTTTCCAATCTGGCATCAAAGCTTCTCCCACTGCTGCATAGTACTGATGACACAGTTTCCAAGAAGACTTCAACAGATGCTGTCGCAGGTGATGAAAAGCTAGAAAAGCGTGGCATATATGAAACAAAACCTAATTCTAGACATTTTCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGACGTGGGTACCAAACTAATGCAATTCTCCGGCAGAATCCAAGTATATGCCGGAGGTCCACTTGACATTGTAAATGTTGCATTGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATAAAAAATAGTTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAATGCAATTCTTCACTTCCAATGAAGAGAGCGGAAACAACAGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGGAGATGAAGTACAAAAGCAGCAAGAAGGGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTTAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTAGTGCATTCCATTATTATGCATTTTATAGTTCCTCTTTGTTGAGGAGTTCAAATGCTAAAATGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACACGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAATCAGACGTTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAGAGGGATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTGAATACGAAATCTGGGAGAGGCACCGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTGGAACTTCCAGAGGACCTTGATCCCCATGTGGCGTCAATCATCGATGATTGCTGGCGAAGTTTTAATATGATAGAGATTTCCTTCTTGGTTCTAACTCAGGTTTACTTGGTTAAAAATGGGAGCAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTCAACAGAATTATGAGAAACACAGACCAACATATTGAGTGGCAACTGGCAACCCTTAAAACATTCTTCCTTCTGAAAGTAGAAGGAAAATTCCGAGAGAGACAAACGGAAGAGGTGGGAGTGGAAGAGGAAGTATAA 2115 0.4255 MTDVVAETSWCFVVLPCSSWSPFGFAIRPHGQTLITSLSALPSASSSSGPSGWYPLRPAGDLQVLTGGGRYLKRRSDAQESHGGNSVWMERLRNHWPKRVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKCTNSENQTYKSANNGQPGVQRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLHSTDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENDVGTKLMQFSGRIQVYAGGPLDIVNVALAAKLQTGVRAKYGKDNGNIKNSCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKEQNLQKCNSSLPMKRAETTACASRASTVSKDYSGDEVQKQQEGSQLPSSRESTGSHESLSGKGDYELNSVSECEIHWEDLQLREEIGQGSAFHYYAFYSSSLLRSSNAKMDVAVKVYFGNGYTEETLHDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRVALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTVVGVVGFMDRRLELPEDLDPHVASIIDDCWRSFNMIEISFLVLTQVYLVKNGSSDPERRPSFEELIQRTLFLVNRIMRNTDQHIEWQLATLKTFFLLKVEGKFRERQTEEVGVEEEV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02479 704 ProSiteProfiles Protein kinase domain profile. 418 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02479 704 Gene3D Transferase(Phosphotransferase) domain 1 402 663 - -
Vimu7g02479 704 MobiDBLite consensus disorder prediction 300 318 - -
Vimu7g02479 704 MobiDBLite consensus disorder prediction 295 328 - -
Vimu7g02479 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Vimu7g02479 704 MobiDBLite consensus disorder prediction 368 402 - -
Vimu7g02479 704 SUPERFAMILY Protein kinase-like (PK-like) 401 665 IPR011009 -
Vimu7g02479 704 Pfam Protein tyrosine and serine/threonine kinase 418 576 IPR001245 GO:0004672|GO:0006468
Vimu7g02479 704 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 236 587 - -
Vimu7g02479 704 SMART serkin_6 418 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02479 Vimu-Chr7 21150619 21156746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02479 92 662 MAP Kinase Kinase Kinase AT4G23050 38.889 4.03e-116 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu7g02479 PK_Tyr_Ser-Thr 4.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02479 - - vra:106777922 902.123