Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02478 ATGGGTAAGGCATCCAAATGGTTTCGCTCCATTCTTGCTCTCAAAAGACCAGACTCGCCGTCCGCCACCGCTCCCAAACCGCCCAAGGACAAACGACGGTGGAGCTTTGTCAAATCCTACAGAGAAAAGCACCATTCCACCGTCGACCACCGTGCACCACCCACCGACGGAGGCCACTCCTCGGTACATGTAGAAAGCTCTGATCCCAACCTTCCAGCACTCACCGCCGTCACCGTCCTCGGAGGCATTACTCGAGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTAGAGCGTTAAAAGGATTGGTGAAGCTACAGGCATTAGTGAGAGGTGAGATAGAAAGAAAGCGAACGTCAGAATGGCTGCAAAGAGTACAAACTCTCTTACGTATTCAGGCCCAGGCCCAATTCCGTGCTGGGCGGGCCCAAATTTTGCACTCTTCTCATTTGAATGCAAACTCATCCACTGGCCACCTCCATGGTTCACCAGACAAATCTGAAAGCCCCATCAGACCCGAGAGCATGAAATATGATGACTCACCATCATTACTCAAGAGAAACAGCTCAAAGTCCCGCATGCATATCAATGTTAACGAAGACAAATCATGGCATGAACGAAGATGGTGGTCAAGAGCTTGTAGCCTGGACGAAGAAAGATGTGTGAGGATTCTAGAAAATGATTCTGTAAAAGCAAACATGACATCAAAGGGTAGAAGCCATGGTTTGGTTAGTGAAGTTCAGTCTTACAGCCCTCTAAAATGGAACGAGGTTGAGGAGAACTCGTCGTGTGGTGCTGACAATAGTCCTCGTACTTTATCCTCTTCTTCTAAAAATGGTGGCTCGAAAAGAAGCCCTTTTACTCCTACCAAGAGCCATCTAAGTGGTTGTTCTGAACCTGATTATCCGAGTTACATGGCATACACTGAATCATCAATGGCAAAGGTAAGATCTGTGAGTGCTCCAAAGCAGAGGCCTACCCAATACCAGAGATCAAGTTCATCTTCTAACAGCTACTCGCTTCATGATAATGGATTTGAATTTGGTGACTCGAAGTTGGCCGCTCAAAGGGTAGCATCATCACACGCAAACTTCACTACCAGGGCTTACCCTGCTTCTGGTCGTTTGGACAAGCCTGGGTTATCTGTGCCGTATTATAAATACTGGCAAACGTAA 1203 0.478 MGKASKWFRSILALKRPDSPSATAPKPPKDKRRWSFVKSYREKHHSTVDHRAPPTDGGHSSVHVESSDPNLPALTAVTVLGGITREEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGEIERKRTSEWLQRVQTLLRIQAQAQFRAGRAQILHSSHLNANSSTGHLHGSPDKSESPIRPESMKYDDSPSLLKRNSSKSRMHINVNEDKSWHERRWWSRACSLDEERCVRILENDSVKANMTSKGRSHGLVSEVQSYSPLKWNEVEENSSCGADNSPRTLSSSSKNGGSKRSPFTPTKSHLSGCSEPDYPSYMAYTESSMAKVRSVSAPKQRPTQYQRSSSSSNSYSLHDNGFEFGDSKLAAQRVASSHANFTTRAYPASGRLDKPGLSVPYYKYWQT 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02478 400 SMART iq_5 85 107 IPR000048 GO:0005515
Vimu7g02478 400 PANTHER IQ-DOMAIN 5-RELATED 1 351 - -
Vimu7g02478 400 MobiDBLite consensus disorder prediction 174 195 - -
Vimu7g02478 400 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Vimu7g02478 400 Gene3D - 84 134 - -
Vimu7g02478 400 MobiDBLite consensus disorder prediction 326 349 - -
Vimu7g02478 400 Pfam Protein of unknown function (DUF4005) 278 353 IPR025064 -
Vimu7g02478 400 MobiDBLite consensus disorder prediction 269 307 - -
Vimu7g02478 400 MobiDBLite consensus disorder prediction 39 68 - -
Vimu7g02478 400 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Vimu7g02478 400 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Vimu7g02478 400 MobiDBLite consensus disorder prediction 269 306 - -
Vimu7g02478 400 MobiDBLite consensus disorder prediction 161 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02478 Vimu-Chr7 21146055 21148584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02478 1 49 IQD Protein Family AT4G23060 46.429 3.67e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02478 - - vra:106777320 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02478 7 21146055 21148584 Vimu7g02478 7 21146055 21148584 PCT