Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02476 ATGCCGACGACAAGGTCCCCGAGCCCTTCTTCTGAGGATATCGTCGATTCGACGCCGCTTCTGGCCAATTCTGGTGGCTCCTCTGAGGAGCTCACCGCCAGCCGTCGATTTGCTCGCCGGCAGAGGCTACGGCAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGCGCAGAATGATGCGCGAGCCGTCGATGCTGGTCCGAGAGGCGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCCGTGGTTGTTCTGGACATCGTTTGGAACTTCGCGTTCGTGGTTGTGGCGGGGACCGTGTTGGTTTTGAGCGCGAGCGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTTTAGGGTACGCTATGCAATGCGTTCTTCACATGGTTTGCGTTTGCGTGGAGTATAAGAGGAGGAGGAGGAACCAACGCGACACCGCGTCGGTTTCAGCGCAGGACAGAGTTGGGAGCAGCAGTGGAACTTTGAGTTTATCTTCGAGGGAGGGTTCTGCTTCTGGCTCTGCGCAGTATGTGTCGTTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCCGGTGGTCAAGAATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGCATAATTTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGCCTGCCATGTATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCCGGAAAATTCAAAGCAATGAGAAATTTACCGGAACTATACAGGGGCCTGTTGGAGGAATAATGACTGAATGCCACGCTGAGTCACCTATGGAACATGTTCTTGCCGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAGGTGTAG 1170 0.5103 MPTTRSPSPSSEDIVDSTPLLANSGGSSEELTASRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGTVLVLSASEAPGMPLRLWILGYAMQCVLHMVCVCVEYKRRRRNQRDTASVSAQDRVGSSSGTLSLSSREGSASGSAQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQELAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKIQSNEKFTGTIQGPVGGIMTECHAESPMEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02476 389 SUPERFAMILY RING/U-box 323 381 - -
Vimu7g02476 389 MobiDBLite consensus disorder prediction 1 31 - -
Vimu7g02476 389 SMART ring_2 334 374 IPR001841 -
Vimu7g02476 389 MobiDBLite consensus disorder prediction 149 173 - -
Vimu7g02476 389 MobiDBLite consensus disorder prediction 152 173 - -
Vimu7g02476 389 MobiDBLite consensus disorder prediction 1 32 - -
Vimu7g02476 389 FunFam E3 ubiquitin-protein ligase At1g12760 320 385 - -
Vimu7g02476 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Vimu7g02476 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 388 IPR013083 -
Vimu7g02476 389 Coils Coil 386 389 - -
Vimu7g02476 389 PANTHER TARGET OF ERK KINASE MPK-1 52 380 - -
Vimu7g02476 389 Pfam Ring finger domain 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02476 Vimu-Chr7 21137780 21143376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02476 8 382 C3H Transcription Factor Family AT1G68070 48.148 5.28e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02476 - - gmx:100790497 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02476 7 21137780 21143376 Vimu7g02476 7 21137780 21143376 PCT