Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02473 ATGATGGCGCCATTACCGGTGGAGCAAACCGCTGAATCAGCGCCGGCGGAGTCACAGAGATCTATCCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTTCGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGTAGTGGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCGATCAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATAATACAGTGCACCGTACCACGAGTTGCACCACTACGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCTAAGCATGTTTCGTCAGCTGATGACGCCATGCATGGTGGCGCTGCCGGCTTAGCGCCGTGTACGAATGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGTAGAAGAACAGAATCAAATGCAAACGCGAGCTCAGGCACAGACACAGACACAGTCCTCTCAAGAACCAGATGGCGGGCCAGATGTGAAATCGGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA 1065 0.5239 MMAPLPVEQTAESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPVVATANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTTPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSADDAMHGGAAGLAPCTNANAAEAEVPKLFGVSIGLKRCRTECEAEPEVEEQNQMQTRAQAQTQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02473 354 Coils Coil 181 208 - -
Vimu7g02473 354 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g02473 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 313 IPR027725 -
Vimu7g02473 354 MobiDBLite consensus disorder prediction 148 176 - -
Vimu7g02473 354 FunFam Heat stress transcription factor B-4 18 116 - -
Vimu7g02473 354 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 MobiDBLite consensus disorder prediction 301 354 - -
Vimu7g02473 354 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02473 354 Gene3D - 18 116 IPR036388 -
Vimu7g02473 354 MobiDBLite consensus disorder prediction 305 328 - -
Vimu7g02473 354 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02473 Vimu-Chr7 21125777 21126929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02473 17 354 HSF AT4G11660 50.986 8.33e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g02473 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02473 K09419 - gmx:100791020 567.385