Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02459 ATGGCGAAGTTGTTAGCGTTAAGTTGCTGGCGAAACCTCTCACCGCGACCTCATTACCCCTCCATGCCTAAATATCCTAAGGGGCAGCCCGCCACCACTGTCGAAGAGCTCTCTGACTCCACCGCTCTTTTCTCCGTCGTCGGAATGACTTGTGCTGCCTGCGCCGGATCCGTCGAGAAGGCCGTCAAACGCCTCCCCGGGATCCGCGAGGCCATCGTCGACGTCCTCAACAACCGCGCCCACGTCGTCTTCTACCCCTCTTTCGTTAACGAAGAGACCATTCGCGAGGCCATCGAAGACGCGGGTTTCGAAGCGCTATTACTCACAGACGGCACTGACGACAAATCTGTTAAAGTATGCCGCATCCAAATCAAAGGTATGACCTGCACCTCCTGTTCCTCCACGCTAGAATCCGTTTTACGAGGCCTTCACGGTGTCCTCGAAGCCCACGTGGGCCTTGCCACCGAAGAGGCCCAAGTCCATTACAACCCAAATCTCCTCCTCAATCCAAACGACATTTTACAAGCCATAGAAGATTCCGGATTCGAAGCAGTGCTCATTAGTTCAAGCGAAGACTTCACCAAGATAGACCTCCGCGTGGAAGGCGCGGTAACCGACGGCGCTTCCATGACGCCAATACTAGATTCTCTGCGGACACTTCCAGGAGTACTTGTGGTGGACTTGACAGAGGAATTCAGCAAAATATCGGTTTCTTACAAACCGGACGTCACGGGACCCAGAGATTTGATCAACGTGATTGAGCAAACAGGGAATGGGAATTTCAAGGCGACGATATATCCTACGGAACAAGGACAAAGAAATTCTCACAGACGCGAGGAGACAAGGCAGTATTATAAATCTTTCTTATGGAGCTTGGTGTTTACTATTCCCGTGTTTCTAACCTCCATGGTGTTTATGTATGTCCCTGGAATTAAGGACGCCCTTGATGCAAAAGTTGTGAACATGCTTACCGTGGGGGAGGTTGCTCGGTGGGTGCTGTCCACGCCGGTTCAGTTCGTACTCGGCTGGCGGTTTTACTACGGTTCTTATAAATCGTTACGCCGTGGTTCTGCGAACATGGATGTTCTCATTGCGTTGGGGACAAACGCTGCGTATTTTTACTCTGTTTACTCTGTTTTGAGAGCTGCTACTTCTCCGCATTTTGAGGGGAATGATTTCTTTGAAACGAGCGCGATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTCGAGATTTTGGCGAAGGGGAAGACGTCTGATGCGATTGCCAAGCTCATGAACTTGACACCCGACACGGCGGTTTTACTGACTTTGGACGCCGATGGGAATGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGAATGATGTGATTAAGATTGTTCCTGGGGCGAAAGTGGCTTCCGATGGGTTTGTTGTGTGGGGGCAGAGTCACGTGAATGAGAGCATGATCACGGGGGAAGCGCGTCCCGTGGCGAAGAGGAAAGGGGACACTGTTATTGGAGGGACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGCGACGAGGGTAGGATCGGAGAGTGCTCTTTCTCAGATTGTTCGCCTTGTGGAGTCGGCGCAGATGGCCAAAGCACCTGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGATGAGATCCTAAAGGGATGGATGGATGTTCCTATGCAGGTGATTGTGATCTCGTTCACGACTTGGCTTGCCTGGTTTTTGGCGGGAAGATATCATGCTTATCCAAAGTCTTGGATACCGTCTTCAATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCAACTGCGGTTATGGTTGGGACTGGAGTTGGTGCATCCCAGGGTGTGCTCATCAAAGGAGGGCAGGCATTAGAGAGTGCACATAAGGTGAACTGCATTGTTTTCGATAAGACGGGTACACTCACTGTCGGGAAACCTGTTATAGTGAGAACAGAATTGTTGACAAAAATGGTGCTCCGGGAATTCTATGAACTTGTGGCTGCAACTGAGGTGAATAGTGAGCATCCATTGGCCAAGGCCGTTGTTGAGTATGCCAAAAAATTTCGAGATGAAGAGAACCCTTCCTGGCCAGAAGCTCGAGATTTTGTTTCCATTACAGGACATGGAGTGAAGGCCACTGTTCAAAACAAAGAAATAATGGTCGGTAATAAGAGCCTGTTGGCTGACCATAACATTGCAATTCCCGTTGAAGCTGAAAATATGCTTGCTGAAGCCGAAAAGATGGCTCAAACAGGAATATTGGTATCTATAAGTGGGAAAGTGGCAGGAGTTTTAGCAGTATCCGATCCACTGAAACCAGGTGCTCAAGAAGTTATTTCCATCCTAAAATCAATGAAAATCAAGAGCATTATGGTGACTGGGGACAACTTCGGAACAGCTAGTTCTATTGCGAGGGAAGTAGGAATTGAGAATGTTATAGCTGAGGCTAAACCGGATCAAAAAGCAGAGAAAGTGAAAGACTTGCAGGCTTCTGGTTACACTGTGGCTATGGTGGGGGATGGTATCAATGATTCGCCTGCACTTGTGGCAGCGGATGTGGGAATGGCAATTGGTGCCGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAAGATGTCATAACTGCTATTGACCTTTCAAGAAAAACATTTACCCGTATAAGGCTGAATTACGTTTGGGCTTTGGGTTATAACTTACTTGGAATCCCAATTGCAGCCGGAGTTCTTTTCCCTTCAACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCTTCCTCTGTCAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTAGACAACCTTGAAATACGAGGCATAAGCATCGAGTCATCCACTGATATATGA 2997 0.4845 MAKLLALSCWRNLSPRPHYPSMPKYPKGQPATTVEELSDSTALFSVVGMTCAACAGSVEKAVKRLPGIREAIVDVLNNRAHVVFYPSFVNEETIREAIEDAGFEALLLTDGTDDKSVKVCRIQIKGMTCTSCSSTLESVLRGLHGVLEAHVGLATEEAQVHYNPNLLLNPNDILQAIEDSGFEAVLISSSEDFTKIDLRVEGAVTDGASMTPILDSLRTLPGVLVVDLTEEFSKISVSYKPDVTGPRDLINVIEQTGNGNFKATIYPTEQGQRNSHRREETRQYYKSFLWSLVFTIPVFLTSMVFMYVPGIKDALDAKVVNMLTVGEVARWVLSTPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLTLDADGNVVGEEEIDSRLVQKNDVIKIVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLDEILKGWMDVPMQVIVISFTTWLAWFLAGRYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVRTELLTKMVLREFYELVAATEVNSEHPLAKAVVEYAKKFRDEENPSWPEARDFVSITGHGVKATVQNKEIMVGNKSLLADHNIAIPVEAENMLAEAEKMAQTGILVSISGKVAGVLAVSDPLKPGAQEVISILKSMKIKSIMVTGDNFGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFTRIRLNYVWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRGISIESSTDI 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02459 998 NCBIfam HAD-IC family P-type ATPase 400 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g02459 998 ProSitePatterns E1-E2 ATPases phosphorylation site. 662 668 IPR018303 -
Vimu7g02459 998 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 932 IPR023298 -
Vimu7g02459 998 FunFam Copper-transporting ATPase HMA5 39 110 - -
Vimu7g02459 998 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Vimu7g02459 998 Gene3D - 118 189 - -
Vimu7g02459 998 SFLD p-type atpase 642 916 IPR044492 -
Vimu7g02459 998 FunFam Probable copper-transporting ATPase HMA5 740 921 - -
Vimu7g02459 998 Gene3D - 667 744 IPR023299 GO:0000166
Vimu7g02459 998 Gene3D - 745 795 IPR023299 GO:0000166
Vimu7g02459 998 PRINTS Copper-transporting ATPase signature 937 951 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase signature 841 858 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase signature 417 435 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase signature 345 364 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase signature 397 416 - -
Vimu7g02459 998 Gene3D - 35 107 - -
Vimu7g02459 998 SUPERFAMILY HMA, heavy metal-associated domain 41 109 IPR036163 GO:0046872
Vimu7g02459 998 SUPERFAMILY HAD-like 659 970 IPR036412 -
Vimu7g02459 998 CDD HMA 122 184 IPR006121 GO:0046872
Vimu7g02459 998 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 11 989 - -
Vimu7g02459 998 SFLD Haloacid Dehalogenase 642 916 - -
Vimu7g02459 998 ProSitePatterns Heavy-metal-associated domain. 124 153 IPR017969 GO:0046872
Vimu7g02459 998 Gene3D - 627 921 IPR023214 -
Vimu7g02459 998 CDD P-type_ATPase_Cu-like 286 974 - -
Vimu7g02459 998 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Vimu7g02459 998 Pfam haloacid dehalogenase-like hydrolase 656 878 - -
Vimu7g02459 998 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Vimu7g02459 998 Pfam E1-E2 ATPase 429 638 - -
Vimu7g02459 998 ProSiteProfiles Heavy-metal-associated domain profile. 194 261 IPR006121 GO:0046872
Vimu7g02459 998 FunFam ATPase copper transporting beta 114 189 - -
Vimu7g02459 998 SUPERFAMILY HMA, heavy metal-associated domain 116 190 IPR036163 GO:0046872
Vimu7g02459 998 ProSiteProfiles Heavy-metal-associated domain profile. 118 185 IPR006121 GO:0046872
Vimu7g02459 998 NCBIfam heavy metal translocating P-type ATPase 360 973 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 789 800 - -
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 660 674 - -
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 811 821 - -
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Vimu7g02459 998 PRINTS P-type cation-transporting ATPase superfamily signature 887 899 - -
Vimu7g02459 998 NCBIfam copper ion binding protein 44 105 IPR006122 GO:0005507
Vimu7g02459 998 NCBIfam copper ion binding protein 122 184 IPR006122 GO:0005507
Vimu7g02459 998 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Vimu7g02459 998 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Vimu7g02459 998 CDD HMA 44 105 IPR006121 GO:0046872
Vimu7g02459 998 Gene3D - 415 537 - -
Vimu7g02459 998 FunFam Copper-transporting ATPase 1, putative 415 537 - -
Vimu7g02459 998 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Vimu7g02459 998 Pfam Heavy-metal-associated domain 122 183 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02459 Vimu-Chr7 21043704 21047895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02459 3 993 Primary Pumps ATPases AT1G63440 74.129 0.0 1507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02459 K17686 - gmx:100816893 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02459 7 21043704 21047895 Vimu7g02459 7 21043704 21047895 ECH
Vimu7g02459 7 21043704 21047895 Vimu11g04397 11 65140944 65149585 PCT