Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02458 ATGGGTGAGAAGTTAGAGTGTTGGGAGTGCAGGAGCAGTTTGCAGTGCTGTGGAAATTTGTGGCCTAAGGCACGCTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGCGGAATTAGAAGGTTCAGAGAGCAAAGTGGTTTTGTTCAGCGTTATGGGAATGACGTGTGCTGCGTGCGCCGGATCCATTGAGAAAACCATCAAACGCTTACCTGGAATCCGAGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCAGGAGGAGAGGATACGCGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTACACCTCAACTCAAATATGCCGCATACACATACGAGGCATGACTTGTACCTCTTGCTCCTCCACTATTGAATCAGCTCTACAATCCCTTCGTGGGGTACACAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAAGCCTCACCCACAACCACCTAATGGAAGCTATTCAAGGCACCGGGTTCGAACCTATACTAATAAGCACAGGGGAACACATTAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTGCACTTCCTGGTGTTGAAACCATAGCCATATATCCGGACATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGAGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGTTACCTCAAGCTTTTCATATGGAGCCTAGCTTTTACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTCAATATGTTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACCCCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAAAGCGTTGCGCAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTATTTTCTCTCGGCATTTCAAGGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCCATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGACCTTGTTAACTCAAGATGACAAGGGGGATGTTGTTAGTGAAAAACAAATTGATATTCGGTTGATACAAAAGGACGATGTGATCAAGGTTGTCCCTGGTTCAAAAGTAGCATCTGATGGCTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGGAAGGCCTGTGGCAAAGAGGAGGGGTGATATGGTGATTGGAGGCACTATGAATGAGAATGGGGTTATGCATGTTAAGGTGACAAGAGTTGGATCCGAGAGTGCTCTCTCCCAGATCGTTCGACTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCAGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTCTCCTGGTTTCTAGCAGGAAAGTTACACGCATACCCGAAATCTTGGATACCATCCTCCATGAACTACTTTGAGCTTGCACTTCAGTTCGGTATTTCGGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACTGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTTTTGATCAAAGGGGGCCAAGCACTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGAACACTCACAGTTGGGAAGCCAGTGGTTGTAACTACAAAACTCTTCAAAAAGATGTCAATTAAAGATTTCTACGAATTTACTGCTGCAGCAGAGGTGAACAGCGAACATCCAATCGCTAAGGCCATTGTTGAGCACGCCAAGAAGATTACAGAAGAACAAAATCATTCCTGGCCAGAAGCACACAACTTTGTTTCTGTTTCAGGCCATGGAGTAAAGGCCATTGTTCTAAACAAGGATATATTGGTTGGGAATAAAAAGATGATGCTGGATCATAACATAACCATTTCAGCAGATGCTGAAGAAATACTAGCAGAAGCAGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCCGTCTCAGATCCATTGAAACCTGGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACAGGTGATAACTGGGGTACTGCCAATTCCATTGCCAGACAAGCCGGTATTGAAACTGTCATAGCAGAGGCTCAACCAGAGACTAAAGCAACTAAAATAAAAGAACTGCAGGCTTCTGGGTATACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATAGGTGCTGGCACAGACATTGCAATTGAGGCAGCTGACATCGTTCTGATGAAGAGCAACTTGGAAGATATAATCATTGCCATTGACCTTGCAAAGAAAACCTTCTCTCGTATACGTCTAAACTACTTATGGGCTTTGGGCTACAATATCTTAGCCATCCCAATTGCAGCGGGCATTCTTTACTCATCCACTAGATTTCGCTTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTGGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTTCGAAGCTAAATAACATGGAGATAAATGGTGTAAAGATTGAATGA 2928 0.4402 MGEKLECWECRSSLQCCGNLWPKARYPSMTAVEAGKTVAELEGSESKVVLFSVMGMTCAACAGSIEKTIKRLPGIREAVVDVLNHKAQEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALQSLRGVHKARVALTTEEAEVHYDPKSLTHNHLMEAIQGTGFEPILISTGEHISKIELKIDGIKNDQSLGAIERSLRALPGVETIAIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAEIFPNDEGREALRQQEINRYLKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERSIFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETATLLTQDDKGDVVSEKQIDIRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEGRPVAKRRGDMVIGGTMNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNYFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLFKKMSIKDFYEFTAAAEVNSEHPIAKAIVEHAKKITEEQNHSWPEAHNFVSVSGHGVKAIVLNKDILVGNKKMMLDHNITISADAEEILAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETVIAEAQPETKATKIKELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIRLNYLWALGYNILAIPIAAGILYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPSKLNNMEINGVKIE 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02458 975 Pfam haloacid dehalogenase-like hydrolase 638 860 - -
Vimu7g02458 975 ProSiteProfiles Heavy-metal-associated domain profile. 116 182 IPR006121 GO:0046872
Vimu7g02458 975 ProSiteProfiles Heavy-metal-associated domain profile. 47 114 IPR006121 GO:0046872
Vimu7g02458 975 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 17 973 - -
Vimu7g02458 975 SUPERFAMILY HMA, heavy metal-associated domain 114 188 IPR036163 GO:0046872
Vimu7g02458 975 FunFam Probable copper-transporting ATPase HMA5 756 903 - -
Vimu7g02458 975 SUPERFAMILY HMA, heavy metal-associated domain 45 109 IPR036163 GO:0046872
Vimu7g02458 975 ProSitePatterns Heavy-metal-associated domain. 122 151 IPR017969 GO:0046872
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 412 430 - -
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 551 565 - -
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 340 359 - -
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 823 840 - -
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 392 411 - -
Vimu7g02458 975 PRINTS Copper-transporting ATPase signature 919 933 - -
Vimu7g02458 975 Pfam Heavy-metal-associated domain 120 180 IPR006121 GO:0046872
Vimu7g02458 975 Pfam Heavy-metal-associated domain 51 101 IPR006121 GO:0046872
Vimu7g02458 975 Pfam E1-E2 ATPase 423 620 - -
Vimu7g02458 975 Gene3D - 186 261 - -
Vimu7g02458 975 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vimu7g02458 975 NCBIfam copper ion binding protein 120 180 IPR006122 GO:0005507
Vimu7g02458 975 Gene3D - 410 532 - -
Vimu7g02458 975 SUPERFAMILY Calcium ATPase, transduction domain A 442 528 IPR008250 -
Vimu7g02458 975 FunFam Copper-transporting ATPase HMA5 115 186 - -
Vimu7g02458 975 SFLD Haloacid Dehalogenase 624 897 - -
Vimu7g02458 975 Gene3D - 115 185 - -
Vimu7g02458 975 Gene3D - 46 110 - -
Vimu7g02458 975 CDD HMA 207 260 IPR006121 GO:0046872
Vimu7g02458 975 SUPERFAMILY HAD-like 641 952 IPR036412 -
Vimu7g02458 975 Gene3D - 609 903 IPR023214 -
Vimu7g02458 975 CDD P-type_ATPase_Cu-like 283 942 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 642 656 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 771 782 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 869 881 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 793 803 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 846 865 - -
Vimu7g02458 975 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Vimu7g02458 975 SFLD p-type atpase 624 897 IPR044492 -
Vimu7g02458 975 NCBIfam HAD-IC family P-type ATPase 395 928 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g02458 975 ProSitePatterns E1-E2 ATPases phosphorylation site. 644 650 IPR018303 -
Vimu7g02458 975 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 913 IPR023298 -
Vimu7g02458 975 CDD HMA 122 181 IPR006121 GO:0046872
Vimu7g02458 975 Gene3D - 726 777 IPR023299 GO:0000166
Vimu7g02458 975 Gene3D - 649 725 IPR023299 GO:0000166
Vimu7g02458 975 ProSiteProfiles Heavy-metal-associated domain profile. 191 257 IPR006121 GO:0046872
Vimu7g02458 975 NCBIfam heavy metal translocating P-type ATPase 355 955 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu7g02458 975 FunFam Copper-transporting ATPase 1, putative 410 532 - -
Vimu7g02458 975 SUPERFAMILY HMA, heavy metal-associated domain 187 257 IPR036163 GO:0046872
Vimu7g02458 975 CDD HMA 51 104 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02458 Vimu-Chr7 21033745 21040435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02458 50 975 Primary Pumps ATPases AT1G63440 71.702 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02458 K17686 - gmx:100817431 1639.01