Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02453 ATGGGTTTTCCTGGCGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGGGTCTGGTCCTGGAACTGGAACACCCTCTGGGTTCCAACCACCTTCTGGGTTCAGAGCTTTGTCTAATGTCTCATCAAATTCTACATTCTCATTAGAAGCTAAGCCTCCGTCTCAGTCTCAACCTCAGCCTCAGCGTGGAGGTTTCGGTCATGGCATCAACTTAAGTTCTTCACCTGGCATCAACCTAAGTTCTTCACCTGGCATTAACTTAGGTTCCTCACCTGATGGTGGAGGTGGAGGTGGAGGTGGAATGCCTTCTTCCGGTGACCCTGTGAAAAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGATAGTGGGACTGTTTCCCTGAGACTCTCTCCCTTGTCTGCCACTGCTAATTCCACCCCGGGATCAGGCACTCCCTCAGAGAAACGACCCAGAGGGCGCCCACCTGGAAGCGGAAGGAAGCAACAGCTTGCTAATTTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCCTTTTCACCACATGTTATCACTGTTGGAGTTGGGGAGGATATTGTAGCAAAGTTATTCTCATTTTCACAGCAGAGGCCAAGGGCTTTGTGCATCTTAACTGGAACTGGTACTGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTACCATCAGTGCTTCTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCACGCAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTGCCAGCCTTATAGCTGCAAGCCCAGTTCAGGTGGTAGTGTGCAGTTTTGTATATGCAGGCTCTAAGCCAAAGACTAAACAAGTGATCACTGCTACAAAAGATAACAATTCTGAACCTCAGAGTAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTAATCAAAACTACTCTTCTCCTGCCCCAGGCATGTGGCCTGCTCAATCAAGGCCATTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1104 0.4882 MGFPGGSAPYYMQHRGGVSGSGPGTGTPSGFQPPSGFRALSNVSSNSTFSLEAKPPSQSQPQPQRGGFGHGINLSSSPGINLSSSPGINLGSSPDGGGGGGGGMPSSGDPVKKKRGRPRKYGPDSGTVSLRLSPLSATANSTPGSGTPSEKRPRGRPPGSGRKQQLANLGEWMNSSAGLAFSPHVITVGVGEDIVAKLFSFSQQRPRALCILTGTGTVSSVTLRQPASTTISASYEGRFQILCLSGSYLVAEEGGPRSRTGGMSVSLSSPDGHIIGGGVASLIAASPVQVVVCSFVYAGSKPKTKQVITATKDNNSEPQSSDKLASPASAPPNQNYSSPAPGMWPAQSRPLEVKSAHPHTGIDLTRG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02453 367 MobiDBLite consensus disorder prediction 20 91 - -
Vimu7g02453 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 180 298 - -
Vimu7g02453 367 MobiDBLite consensus disorder prediction 1 164 - -
Vimu7g02453 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 183 296 IPR005175 -
Vimu7g02453 367 MobiDBLite consensus disorder prediction 129 148 - -
Vimu7g02453 367 PRINTS AT-hook-like domain signature 149 160 IPR017956 GO:0003677
Vimu7g02453 367 PRINTS AT-hook-like domain signature 112 122 IPR017956 GO:0003677
Vimu7g02453 367 MobiDBLite consensus disorder prediction 310 367 - -
Vimu7g02453 367 CDD DUF296 183 295 IPR005175 -
Vimu7g02453 367 Gene3D - 183 312 - -
Vimu7g02453 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 332 IPR039605 GO:0003680
Vimu7g02453 367 ProSiteProfiles PPC domain profile profile. 175 317 IPR005175 -
Vimu7g02453 367 MobiDBLite consensus disorder prediction 310 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02453 Vimu-Chr7 21009700 21013108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02453 1 367 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.970 9.22e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02453 - - gmx:100795781 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02453 7 21009700 21013108 Vimu11g04403 11 65164324 65167601 PCT