Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02440 ATGTCTTCTGATCTTTATACTTTTGACATTCCTTTCCCCAGACATTCAGACACAGACAACATGGTCTCCTATGATGCAGATGGAAATCTCATGTCTTTCTCTGACCCTTATTCCTTCCCTTTCCTCACTGCCTGTCCGGTTCATGATCTGGCTAAAGGGAATTTTACCAACTCTCTTCACCCTTCTTTCTTCTCTTATTCTCCTCAGCAAAACCAGAGCCTCTGTCATGCTAACCTGGCGCAGCATGTATCAAATGGCTCAAATATAAAGTCTGAGTTTAGAAATTTCTCTGCTTTGCATGGCTCCGAAGTGACAGGTGAGGAGTGCCAAATGGGTGTGGATTACTCCTGCAATCAGCACTTTCTTTCTCAAACTTTTCATGCTTCTTCTGATAGTGCATCGAAGGTAATACAGAGGAGCTTCAGCTGTAACTCTTTCGGGGTGAAGCCAGGTTTCCCCTTTGAACCTTACCCCGACACTCTCATGGACTCCCCAAATTTTCAATTGCATGCTCTGATTTCCCCTGAAAACAGTTTCTTCACGGGACAAATGAGGAGGGTGTGTAGTACTGGAGATTTACAGAACACGAAAGCAACAGATATGTCTCAAGTGGAGAGCCCCTTGTTGGAGGAAGCATACTTCAAAGTGGGGCGTTACAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAAATACAGAGCGAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACGCTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCTCGCAACGACGAAATGAGCGAGATTCCGAAAGCACTTTCTTCAACTTCGACAACAGAAGAATATGAAGACGAATTCTGGGTTGAGTTCATCGAAGGATTAAACGAGGAGGTCATCGGTTAG 912 0.4452 MSSDLYTFDIPFPRHSDTDNMVSYDADGNLMSFSDPYSFPFLTACPVHDLAKGNFTNSLHPSFFSYSPQQNQSLCHANLAQHVSNGSNIKSEFRNFSALHGSEVTGEECQMGVDYSCNQHFLSQTFHASSDSASKVIQRSFSCNSFGVKPGFPFEPYPDTLMDSPNFQLHALISPENSFFTGQMRRVCSTGDLQNTKATDMSQVESPLLEEAYFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEMSEIPKALSSTSTTEEYEDEFWVEFIEGLNEEVIG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02440 303 ProSiteProfiles CCT domain profile. 224 266 IPR010402 GO:0005515
Vimu7g02440 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 62 278 IPR045281 GO:0009909
Vimu7g02440 303 Pfam CCT motif 224 266 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02440 Vimu-Chr7 20902142 20903597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02440 220 271 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 2.29e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g02440 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02440 - - pvu:PHAVU_002G158500g 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02440 7 20902142 20903597 Vimu7g02440 7 20902142 20903597 ECH
Vimu7g02440 7 20902142 20903597 Vimu11g04433 11 65436331 65438091 PCT