Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02435 ATGGCTCGACAACTGTGTGAAGATAAATCATCATCAGAATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTTCTTCCTCTTCCAAAACCATGAACGAATCTTCCACCCCTTTCTACCACCGTGACTACAGCAACAAGCCTTCAGATTTCACACCGGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATTGTTGGAGCCCACGATTCGGCCCCGTGGCAAGACGACAACAGCCATAACAGGTTTGACGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGCCAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCACCATCCTGATTTTGTTCCCTCGGGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGTGAGTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGTTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCGAAGATAAGTGAGGCGGGAAAGCTTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACATATGTACTGGTTCCTCGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTCGACAGAAGGTACAAGCACTATCGAAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCGGTGGCGGGTAATGGTGCTGCCACGGTGTACTCAGCGTTGGCTCTTAAAGCCATGTCGAGACATTTCAAATGTTTGAAGGATGGGATTTTTGGGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACACCTAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCATTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCTCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGCACGTTCATATCTTTCTCTAACACATACACACCTAAATTCCCATTGGTTACATATGTTTTGCGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAGAACAACATAGCTTCCTCAGAGGGTGCTACTGATCCAGACAATGATATAAACTCAAATAATGTTCAAAACCCTCCACCCCATACAATACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATAGACTCCGAGTGTGCGTCCTCCATCATCAACAACCACACCATAGACAACAAAAACGACCCAAAGAGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCATACACACACCAGTCCCCGGGCATGGTTTCTTTCGGAAGCAATGATCAAAGCGGGAACAGCCAGAGCGGAGTGTCTCTGACACTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCATCACAGAGTTCACTGTACTACGCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTCTTGGATGCTGAAGGACAAAACCTGCCTTACAGAAATTTAATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1977 0.4745 MARQLCEDKSSSEFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGSSSSKTMNESSTPFYHRDYSNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNSHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSGSREGFFGKPVSVQQQQMLQDGYVSSNSKAASVYQQGHFLVKNSKYLLPAQDLLNEFCSLDAKISEAGKLKSLKKQWEEDNICTGSSKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGIFGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQARSYLSLTHTHLNSHWLHMFCVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSEGATDPDNDINSNNVQNPPPHTIRSEDQKPSLLRIDSECASSIINNHTIDNKNDPKSQEQCFGSVELDFSSYTHQSPGMVSFGSNDQSGNSQSGVSLTLGLQQHGVSLAFPPPSQSSLYYANPRDQIEDCQPVQYSLLDAEGQNLPYRNLMGAQLLHDLAG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02435 658 MobiDBLite consensus disorder prediction 496 521 - -
Vimu7g02435 658 Pfam Associated with HOX 221 343 IPR006563 -
Vimu7g02435 658 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 502 - -
Vimu7g02435 658 SMART HOX_1 396 481 IPR001356 GO:0003677
Vimu7g02435 658 MobiDBLite consensus disorder prediction 495 525 - -
Vimu7g02435 658 Gene3D - 399 482 - -
Vimu7g02435 658 SMART prehox3 215 345 IPR006563 -
Vimu7g02435 658 Pfam Homeobox KN domain 413 473 IPR008422 GO:0003677|GO:0006355
Vimu7g02435 658 CDD homeodomain 396 478 IPR001356 GO:0003677
Vimu7g02435 658 SUPERFAMILY Homeodomain-like 397 484 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02435 Vimu-Chr7 20864224 20867239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02435 137 657 Homeobox Transcription Factor Family AT5G41410 46.466 1.25e-133 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02435 - - gmx:100803088 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02435 7 20864224 20867239 Vimu7g02435 7 20864224 20867239 ECH
Vimu7g02435 7 20864224 20867239 Vimu11g04440 11 65496794 65499951 PCT
Vimu7g00643 7 6477404 6485230 Vimu7g02435 7 20864224 20867239 PCT