Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02432 ATGAGCAGCAAAGGCAAAGAGGAAGAAGGGATTAAGAAGGTTTTGATTCATGGAGGTCGATACGTGCAATACAACGTTTATGGACACTTGTTCGAGGTACCCGCAAAGTATGTCCCTCCGCTTCGTCCCATCGGAAGAGGTGCATACGGCATCGTTTGTGCTGCTGTTAATTGCGATACTCATGAGGAAGTTGCCATAAAGAAGATTGCTAACGCCTTTGACAACATCATTGACGCTAAACGGACTTTGAGGGAGATTAAGCTCCTTCGCCACATGGACCATGAAAATATAATTGCTGTTAGGGATATCATACGACCTCCAAGAAAGGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGACCTTCACCACATTATTCGTTCTGATCAACCTCTTAACGATGACCATTGTCAGCTTTTACGGGGGCTGAAGTATGTGCATTCGGCTAATGTCTTGCACCGAGATCTTAAGCCCAGTAATTTGCTTCTGAATGCGAACTGTGACCTTAAAATTGCTGACTTTGGTTTGGCAAGGATAACATCAGAAACCGATTTCATGACGGAGTATGTGGTCACCCGGTGGTATCGTGCCCCGGAATTGCTCCTCAATTGTTCGGAGTACACCTCTGCAATTGACGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTTTGACCAGGGAACCCTTGTTTCCTGGGAAAGATTATGTTCATCAACTAAGGCTTATAACGGAGTTATTAGGTTCACCAGATGATGCTAGTCTTGCATTTCTCCGAAGTGAAAATGCTAAAAGATATATTCGACAGCTTCCCCGTTATAGGAAGCAAAATTTCTCGGCTAGATTCCCAAGTATGTCTCCTGAGGCATTGGATTTACTAGAGAAGATGCTTATCTTTGATCCCAACAAACGCATTACAGTTGATGAAGCACTGTGTCACCCATACCTTTCATCACTTCATGACATCAATGATGAACCAGTTGGTCCTGGGCAATTCAATTTTGATTTTGAGCAGCCAACATGCACTGAAGAGCACATCAAGGAGCTCATCTGGAGGGAATCAGTGAAATTCAATCCGGATCCACCCAGTCAATAA 1104 0.433 MSSKGKEEEGIKKVLIHGGRYVQYNVYGHLFEVPAKYVPPLRPIGRGAYGIVCAAVNCDTHEEVAIKKIANAFDNIIDAKRTLREIKLLRHMDHENIIAVRDIIRPPRKDAFNDVYIVYELMDTDLHHIIRSDQPLNDDHCQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARITSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEILTREPLFPGKDYVHQLRLITELLGSPDDASLAFLRSENAKRYIRQLPRYRKQNFSARFPSMSPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHDINDEPVGPGQFNFDFEQPTCTEEHIKELIWRESVKFNPDPPSQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02432 367 Pfam Protein kinase domain 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02432 367 SMART serkin_6 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02432 367 ProSiteProfiles Protein kinase domain profile. 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02432 367 FunFam Mitogen-activated protein kinase 122 346 - -
Vimu7g02432 367 SUPERFAMILY Protein kinase-like (PK-like) 41 327 IPR011009 -
Vimu7g02432 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 320 - -
Vimu7g02432 367 ProSitePatterns MAP kinase signature. 73 171 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu7g02432 367 FunFam Mitogen-activated protein kinase 23 131 - -
Vimu7g02432 367 CDD STKc_TEY_MAPK 31 362 - -
Vimu7g02432 367 Gene3D Phosphorylase Kinase; domain 1 21 356 - -
Vimu7g02432 367 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Vimu7g02432 367 Gene3D Transferase(Phosphotransferase) domain 1 122 346 - -
Vimu7g02432 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02432 Vimu-Chr7 20827897 20830381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02432 7 362 MAP Kinase Gene Family AT4G01370 80.609 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu7g02432 Pkinase 2.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02432 - - gmx:100803024 702.205