Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02431 ATGGGCTCTCATATGAGTCCATTCGCTGGAATCATTTCCGAGAAGAACCGTCGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATCTGGCGAAGCACCCAGAGATTGACGTTCCAAATCTGCAGGTGATAAAACTGATGCAGAGCTTCAAGTCCAGGGAGTACGTGCGCGAGACATTTGCTTGGATGCATTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGAACATACCTCAACCTTCCCTCGGAAATCGTGCCCGCCACTCTTAAGAAGCAAGCCAAGCCCGCCGGAAGACCATTCGGTGGCCCACCCGGTGATCGTCCAAGGGGCCCACCTCGCTTTGAGGGAGAGAGGAGATTCGGTGGTGATAGAGATGGATACCGTGGGGGTCCCCGGGGACCTGGCGGTGACTTTGGGGAGAAAGGTGGAGCTCCTGCTGACTACAGACCTTCATTTGGGGGTCCTGGTGGAAGGCCTGGTTTCGGTCGTGGTTCTGGTGGTTATGGAGCACCAACAAGTTCAAACATTCCTTAA 567 0.5273 MGSHMSPFAGIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGEKGGAPADYRPSFGGPGGRPGFGRGSGGYGAPTSSNIP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02431 188 MobiDBLite consensus disorder prediction 100 188 - -
Vimu7g02431 188 PANTHER 40S RIBOSOMAL PROTEIN S10 11 182 IPR037447 -
Vimu7g02431 188 Pfam Plectin/S10 domain 12 103 IPR005326 -
Vimu7g02431 188 Gene3D - 11 113 IPR036388 -
Vimu7g02431 188 FunFam 40S ribosomal protein S10 10 113 - -
Vimu7g02431 188 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02431 Vimu-Chr7 20823014 20824861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02431 11 188 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 75.843 1.01e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02431 K02947 K09422 gmx:100803556 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02431 7 20823014 20824861 Vimu7g02431 7 20823014 20824861 ECH
Vimu7g02431 7 20823014 20824861 Vimu11g04445 11 65546742 65547321 PCT