Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02430 ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGAATTCATCAATCACCACAACACAAAGTGTGGATCACCACCCTCAGTTCAATTATAATTCCAACCAACTAGATCACTTTGGCAACCAAGACAATGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGACCACGGGACAACAACAGTAGACACCACCAAACTGTTCCAAGATTCATTGGGTTTGAGCAGTGAAACGTGGAACTTGAGCCACCACCAAGTCCATCATGGTATTCTTCCTCAAGCAGCACCGGCAGCAGCAACTTTTACAGCGGCTACAGTGATTGATAGTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGAGGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAGCTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACAAATACACTTTCACCTTTTCCTTCATCTTTATGA 963 0.4403 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVNSSITTTQSVDHHPQFNYNSNQLDHFGNQDNVTTKPAVQETIFSSTCPLFMFDTSSLDHGTTTVDTTKLFQDSLGLSSETWNLSHHQVHHGILPQAAPAAATFTAATVIDSTNYLPPLIENVENMVPNMEVQGCSIEEEGEMALECLRRQELNEWVENQQHCPSFLFWDSVEGQLGGEELAPNTSNIGTNTLSPFPSSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02430 320 Gene3D - 69 140 - -
Vimu7g02430 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu7g02430 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu7g02430 320 CDD SANT 69 112 IPR001005 -
Vimu7g02430 320 FunFam MYB transcription factor 6 66 - -
Vimu7g02430 320 CDD SANT 17 61 IPR001005 -
Vimu7g02430 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu7g02430 320 FunFam Transcription factor MYB26 68 137 - -
Vimu7g02430 320 SMART sant 66 114 IPR001005 -
Vimu7g02430 320 SMART sant 13 63 IPR001005 -
Vimu7g02430 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu7g02430 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu7g02430 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu7g02430 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu7g02430 320 MobiDBLite consensus disorder prediction 300 320 - -
Vimu7g02430 320 PANTHER MYB DOMAIN PROTEIN 55 1 240 - -
Vimu7g02430 320 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02430 Vimu-Chr7 20819160 20820936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02430 1 304 MYB Transcription Factor Family AT1G63910 51.117 2.49e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g02430 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02430 K09422 K02947 gmx:100803556 586.26