Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02426 ATGGCTTGGGATTTGCATGCTATTGTGGGATGTACCATTGCCCCAGCCACCATTAAGGAAAACCCGAATCTCATTCTTTCTCAACATTTTTCTACTGAACAAGATGACCTACTTTGCAATTTTCAGGAATTCTCAGAAACCAAAACGGTGCTTGATGAATTGGAAGAGATTTTTAAACCTTTCTACCACCATTTTCGTAACAGCCCTCGTTCCATCATTTCAAAAAACTCAAACCATCAAACAAACAAGAAGAAGCAGAAGAGCAAGAGGGTGGTGAAGCATATGACAGCAGCAGATGGTGTGTCAGACCCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGATCACCATATCCACGTAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCTAGGAAACACGACGTAGCAATTTGGATACCTACACCGCAGAACACAGCCCTCACCAAGCTCGAAAAAGCACAAGTTCCACCATTGCACCTCCTCTAA 501 0.4351 MAWDLHAIVGCTIAPATIKENPNLILSQHFSTEQDDLLCNFQEFSETKTVLDELEEIFKPFYHHFRNSPRSIISKNSNHQTNKKKQKSKRVVKHMTAADGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKHDVAIWIPTPQNTALTKLEKAQVPPLHLL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02426 166 Pfam WRKY DNA -binding domain 103 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02426 166 SUPERFAMILY WRKY DNA-binding domain 95 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02426 166 ProSiteProfiles WRKY domain profile. 96 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02426 166 Gene3D WRKY domain 82 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02426 166 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 69 137 IPR044810 GO:0003700
Vimu7g02426 166 SMART WRKY_cls 101 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02426 Vimu-Chr7 20778539 20779187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02426 51 138 WRKY Transcription Factor Family AT4G23550 44.715 5.11e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g02426 WRKY 2.5e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02426 K13426 - gmx:102667019 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02426 7 20778539 20779187 Vimu7g02426 7 20778539 20779187 ECH
Vimu7g02426 7 20778539 20779187 Vimu8g02244 8 29196482 29197057 ECH
Vimu7g02426 7 20778539 20779187 Vimu3g02990 3 43943056 43944804 ECH
Vimu7g02426 7 20778539 20779187 Vimu9g00234 9 2836959 2837582 ECH
Vimu7g02426 7 20778539 20779187 Vimu6g00589 6 7112746 7114423 ECH
Vimu7g02426 7 20778539 20779187 Vimu11g04452 11 65621927 65622936 PCT