Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02416 ATGGATCATAGAAACATTTTGTTATCGGCGCTGAGTGTTGGGGTGGGCGTAGGAGTTGGGATTGGGTTGTCCTCCGGACAAGGCCTTTCCAAATGGGGTGTTAATGGTAATTCTTCCTCAGACCGTGTTACTCCGGAGAATCTCGAACAGGAAATGCTACGAATGGTCGTGGATGGCAGAGAAACCAATGTCACTTTTGATCAATTCCCTTTTTATCTTAGGGAGCAGACAAGGGTGACGCTAACAAGTGCTGCTTATGTCCATTTGAAGAATGCGGAGGTTTCCAGACATACACGGAATCTTGCTCCTGCAAGCCGGACTATCATGCTTTCAGGGCCAGCGGAGCTTTATCAACAAGTGCTTGCCAAAGCTTTAGCCCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATCTTACTGACTTTTCATTGAAGATTCAGAATAGATATGGTTATGCCAACAATCGATCGATTTTCAAAAGGTCTACCTCAGAGACAACTTTGGAGCGGATATCCGATCTATTTGAATCATTTTCAATCTTTTCACAAAAAGAAGAACTTAAAGATGAAGAGAGAGTAGAGATGTGTGTTGCAATTTGGTTACGCTCAACGGAATCTGAAAGATTGTATAATTCTTCCAAGATTCGTAGGAATGCGTCTGCCTCTGCAAATATCAGTAGCTTTGCTTTGCAAAGCAATCCTACAAATTCAGCCCCTCAGAAGAACATAACCAACTGGCCTTTTGATGAAAAGCTTCTTGTACAAACTCTTTATAAGGTTCTAGTTTATGTATCAAAAACCTATCCTATTGTTCTATATTTGCGGGATGTTGACAAGTTATTGTATAGATCACAACGGATATATAACCTATTCCAGAAAATGTTGAATAAACTGCATGGACGAATTTTGATTCTTGGTTCACGAGTTTTGGATTCTGGAATTGACTACAAAGAAGTGGATGAAAGACTTTCTTCCGTCTTCCCCTACAACATAGAAATCAGTCCCCCAGAAGATGAATATTATCATGTCAGCTGGAAGTCTCAATTTGAAGAGAACATGAAGACGATACAGACTCAGGATAATAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTTATTGTGATGACCTGGGTTCCATCTGTGTGGCAGATACAATGGCTTTCAGTGACCATATAGAAGAGATCGTCGTGTCAGCAATTTCTCATCACTTAATGAATAACATAGATCCTGAATACAGAAATGGCAAACTAGTTATTCCTTGTAGCAGCTTGTCCCATGCATGGGGTATATTCCAGGAGGGGAAATTCAGTACAAGAGATACATTAAAATTAGAAGCCCAGACAGTTACGACAGAGCCGAGAGAAGAAGCTGTTGTGATGCCAGAAACAGCGTCAGAAAAACCTGCTCCTGAAATAAAGGCTGAAGCAGATACATCAATTTCAGTGGGAACAACTGACGGTGAAAATGCAGTTCCTGCATCAAAAGTTGAAGTTCCCCCTGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAAATTGGTGTAAAATTCTCTGATGTTGGTGCCTTAGATGAGACCAAAGAATCGCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTTTTTGGACCTCCTGGCACGGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAAGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTTTGTTCACTCTGGCGGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGGCAACGTACCAGAGTTGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAGTTTATGACACTTTGGGATGGATTAATGACAAATCCATCGGAGCGTATCCTTGTTCTTGCTGCGACCAATAGGCCGTTTGACCTGGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATAATGGTGGGGATGCCAAGCGTGGAGAACAGGGAAAAAATTTTGAGGACTCTTTTGCGAAAAGAAAAGGTGGACAAGAAATTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATACAGCGGAAGTGATCTCAAGAACTTGTGTACAACTGCTGCTTACAGACCTGTTAGAGAGTTAATTCGACAAGAGAGACTAAAAATGCTGGAGAAAAGGCAGAAAGGTGTTGAAGAACAGAATAACAATGTCCAAGATGCTTTGGAAGCAAAAGAGGAAGTTAAACAGGAAAGAGTAATTTCCCTTAGACCTTTGAACATGCAAGACTTCAAAGAGGCTAGGAGTCAGGTTTCCGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAATGAAATGTATGGGGAAGGAGGTTCAAGGAAGCGAGAGCAATTATCTTACTTCCTGTGA 2520 0.4206 MDHRNILLSALSVGVGVGVGIGLSSGQGLSKWGVNGNSSSDRVTPENLEQEMLRMVVDGRETNVTFDQFPFYLREQTRVTLTSAAYVHLKNAEVSRHTRNLAPASRTIMLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNRYGYANNRSIFKRSTSETTLERISDLFESFSIFSQKEELKDEERVEMCVAIWLRSTESERLYNSSKIRRNASASANISSFALQSNPTNSAPQKNITNWPFDEKLLVQTLYKVLVYVSKTYPIVLYLRDVDKLLYRSQRIYNLFQKMLNKLHGRILILGSRVLDSGIDYKEVDERLSSVFPYNIEISPPEDEYYHVSWKSQFEENMKTIQTQDNRNHIMEVLAANDLYCDDLGSICVADTMAFSDHIEEIVVSAISHHLMNNIDPEYRNGKLVIPCSSLSHAWGIFQEGKFSTRDTLKLEAQTVTTEPREEAVVMPETASEKPAPEIKAEADTSISVGTTDGENAVPASKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTLWDGLMTNPSERILVLAATNRPFDLDEAIIRRFERRIMVGMPSVENREKILRTLLRKEKVDKKFDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIRQERLKMLEKRQKGVEEQNNNVQDALEAKEEVKQERVISLRPLNMQDFKEARSQVSASYAAEGAGMSELKQWNEMYGEGGSRKREQLSYFL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02416 839 Coils Coil 753 783 - -
Vimu7g02416 839 Pfam ATPase family associated with various cellular activities (AAA) 561 691 IPR003959 GO:0005524|GO:0016887
Vimu7g02416 839 Pfam AAA+ lid domain 715 750 IPR041569 -
Vimu7g02416 839 ProSitePatterns AAA-protein family signature. 664 683 IPR003960 GO:0005524|GO:0016887
Vimu7g02416 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 807 IPR027417 -
Vimu7g02416 839 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 520 695 - -
Vimu7g02416 839 Gene3D - 693 775 - -
Vimu7g02416 839 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 838 - -
Vimu7g02416 839 SMART AAA_5 557 694 IPR003593 GO:0016887
Vimu7g02416 839 Gene3D - 520 781 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02416 Vimu-Chr7 20693698 20699405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02416 473 755 Calmodulin-binding Proteins AT3G56690 35.395 1.03e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02416 - - gmx:100783137 1322.76