Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02403 GGTAGAGTTGCAGAGACTCCGCGCGGGTCGACCGGAAAGAAATTCCGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCGGAGATACGAGACCCGTCGCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCTGCCACGTGGCACAACAAAGACCAGACGCCGGTGTCCCACGGTTACGCCTCCGTTGAGGAAACTCATAACAAAAACCTGTTTTCTCCCACCTCCGTACTTCATTCTTGCTCTTTGTCTGAGGAAGCAGAATCCGTGACCGGCAAAGACGATGACTTCTCCTCCGTGTCTGAGAGTTCCAAGGCAAAAGCTGAGTCACCGTTTCCGGTTCCGATTCCGATTCCGAGCGAACTAAAATTTGACTTCGAAGACTGTTTGGCGGCACCGGACGTGTACGGCGAGTTGGACAGCGCTGCGGCGGCTGAGAGTGTGTTGTTCTCCGACGATGAGTGGCCTGGGGTGTTTCTCACTGCTTGTGATGATTTCGGATTGAAAAGTTGGCATGCAGACAGAAATCATGACTTTTTCCAAGACATCGACGATTTATTCGTCTCCGATCCTCTTCTTGCTCTTTGA 675 0.5378 GRVAETPRGSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNKDQTPVSHGYASVEETHNKNLFSPTSVLHSCSLSEEAESVTGKDDDFSSVSESSKAKAESPFPVPIPIPSELKFDFEDCLAAPDVYGELDSAAAAESVLFSDDEWPGVFLTACDDFGLKSWHADRNHDFFQDIDDLFVSDPLLAL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02403 224 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Vimu7g02403 224 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vimu7g02403 224 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vimu7g02403 224 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Vimu7g02403 224 SUPERFAMILY DNA-binding domain 14 70 IPR016177 GO:0003677
Vimu7g02403 224 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Vimu7g02403 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 137 - -
Vimu7g02403 224 MobiDBLite consensus disorder prediction 117 131 - -
Vimu7g02403 224 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Vimu7g02403 224 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Vimu7g02403 224 MobiDBLite consensus disorder prediction 116 140 - -
Vimu7g02403 224 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02403 Vimu-Chr7 20605404 20606369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02403 3 224 AP2-EREBP Transcription Factor Family AT4G23750 43.083 4.26e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02403 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02403 - - vra:106777252 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02403 7 20605404 20606369 Vimu7g02403 7 20605404 20606369 ECH
Vimu7g02403 7 20605404 20606369 Vimu11g04490 11 65913126 65914987 PCT