LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g02401	ATGGAACAGTTCCGGCATATCGGAGAGGTGGTTGGGAGTCTGAAAGCGCTTATGGTTCTGCGCGATGAAATCCAAATCAACCAACGGCAATGCTGTTTGATCCTGGACATATTCAGTTTGGCGATGGACACGATCGCTGAGGAGATGCGGCAGAACCTGAAGCTGGAAGAGAGGAACAGCAAATGGAAGGCTCTGGAATCTCCTCTGACAGAGTTGTGCAGGGTTTTCAAGGAGGGAGAGGATTACATAAAGCAGTGTTTGGATTCCAAACATTGGTTGGGGAAAGCCATCACCCTCTCTCATCACCGAGACTGCGTGGAATTCCACATCCACAACCTTCTCTGCTATTTCCCGGCGGTGATCGAGGCGATCGAGATTGCAGGGGAGAATACGGGTTTAGATCCGGAGGAGAAGGCAAAGAAGAAGGTGATACTGGGTCGGAAGTATGACGTGGAATGGAAGGACCCGGAGCTGTTCCAATGGAGGTTCGGGAAGCAGTACCTGGTCCCGCGCGGGATTTGCAAGAAGTTGGAGAACGCCTGGAGAGAGGACAGGTGGAGGCTCATCGAGGCCATCAAGGACAAGACTGCGAAGGAAGGTGGTTCAGCTGTGTTTAGGGAGAGCGAGCATGGCCTCGCTGTTATGCTCCTCAAAAAGCTTCTCAATGGGTCGGAGATCGGCCCAATTGCGGTGCTTGTTGGGTCCACAGATTTCCAGGTGAGACGGAGGTTGGGCCACCGGAAGGACTTCAAGGAAATCCAATGGTTGGGGCAAAGTTTCGCGATGAGGAACTTTGAAGGGGAGAGAGAAGCACACCAGACTGAGGTCTCCTCTATTCTCTCGCTTTCACACCCCAACATATTGCAATACCTTTTCGGGTTTTACGACGAGGAGAAGAAAGAGTTCTCTCTTGTGATGGAGTTAATGAACAAGGATCTGTGGACTTACATGAAAGAGAATTGTGGTCCAAGGGGGCAGATTCTATTCTCTATCCCTGTTGTGGTGGATCTCATGCTTCAGATGGCCAGAGGCATAGAGTACCTGCATTCCCAAAACATTTGCCATGGACACCTTAACCCTTGTAATATTTACCTCAAGAAAATGAACTCCCAAGAGGATTATTTTCAGGCAAAGGTTGCAGGCTTTGCCTTGTCTTCTATCAACAATGCTAGTACTGACGATACTGCCATCCAAGACTTTAACCCTTTAACCTGGTATGCTCCTGAAGTTCTGTCCCGGTTGGAACAAAAGAATGGTGGTGCTTCTTCTTCTAAGGAAGCCGATGCCTACAGCTTTGGGATGATATGCTTCCAGTTGTTGACAGGAAAAGTGCCTTTTGAAGATAACCACCTTCAAGGAGACAGAATTAGACAAAACATAAAGGTCGGTGAGAGACCTTTGTTTCCTTACCGTTCCCCGAAATACCTTGTGAATTTGATCAAGAAGTGCTGGCAAACTGACCCTGCTCAGCGTCCTAGCTTCTCGTCCATATGTAGGATTTTGCGGTACACCAAAAAGTTCCTTGCCATGAATTCAGAGTCCCAAATCATCAACCCTGAGCTCAACTTTCTTGAGGTTCCACCTGTGGATTGCTTTGAGATAGAGACAACGTTCCTAAAGAGCTCTTCAACCGAGAGGTCATCTTGTGTGTCCGCTGTGTCCCAGATACCCTATGAAATGTTTGCTTATAAGGTTGTGGAGAAAGAGAAAATGAATCCTAACAACAGTACTACCAAAGATGAGTGCTGCGAGCACCACCAAAAGGATGGGTGTAGGAGTGAAAGTGATGACCCTAGTGCAGAGTGCGATGGTGATAACACCTCCATAGTGACAGATTCGCTCCCTCAAACAACCCATCCTACATCAATTTGCAGTGACGCAAAGTTTGTTTCCTCTGAAGTCCCCTACAAGAAAACGGTTAGAATAAAGAACCAAACACATGTGAAGGCAAAGAAAGAACAAGAAAAACAAATATTGCGGGCGACAAAATCATTTCGACCGTCTTTATCGAGTCGAGTTTCAAGGACGAGAAATGTGAATACATCCTCATTGCCACCAAGCAATTTGAGTCCAAGCAGATCTTTCCTGGGGTCTCAATCACCAGCATCACCATCACTACCCATTCCTTCAAGGAAAAAACACGATGGCAATTTGTCGGATACTAAGACCAGTGTAAGGTTGAAAAAAATGGATCAGTCAACATTACCTAGATATGGGAGCATGGCAGATAGTTCAAGGATGAAGAAGTCACAAATGACGTTGAACCAATCTTTGAGCGTGGGAAGAATGAGACGTGCCAACACTGAGACCGATTTGAAGGGGCTCACGCGAACCAATCTACTGAGCACTCCAAGAGCATCCACAAGGAGCAGAAAAGATGGTAATGTCTCAGTTTCGGACAGCGGTTCAAGGATGCCAACAGGTGGGTTTTCGCCGTGGGCATTGAGTCCCCAAAGCCCCCATTTAAGAACAAATAAAGCAACCTTTCATCTCTCTGACTATGAAAACAGTTTTGTGAAGAAAAGAGGAAGCATGTCACCGTTCGCAACTTGTGGCCATGTCTCGGATTAA	2571	0.4702	MEQFRHIGEVVGSLKALMVLRDEIQINQRQCCLILDIFSLAMDTIAEEMRQNLKLEERNSKWKALESPLTELCRVFKEGEDYIKQCLDSKHWLGKAITLSHHRDCVEFHIHNLLCYFPAVIEAIEIAGENTGLDPEEKAKKKVILGRKYDVEWKDPELFQWRFGKQYLVPRGICKKLENAWREDRWRLIEAIKDKTAKEGGSAVFRESEHGLAVMLLKKLLNGSEIGPIAVLVGSTDFQVRRRLGHRKDFKEIQWLGQSFAMRNFEGEREAHQTEVSSILSLSHPNILQYLFGFYDEEKKEFSLVMELMNKDLWTYMKENCGPRGQILFSIPVVVDLMLQMARGIEYLHSQNICHGHLNPCNIYLKKMNSQEDYFQAKVAGFALSSINNASTDDTAIQDFNPLTWYAPEVLSRLEQKNGGASSSKEADAYSFGMICFQLLTGKVPFEDNHLQGDRIRQNIKVGERPLFPYRSPKYLVNLIKKCWQTDPAQRPSFSSICRILRYTKKFLAMNSESQIINPELNFLEVPPVDCFEIETTFLKSSSTERSSCVSAVSQIPYEMFAYKVVEKEKMNPNNSTTKDECCEHHQKDGCRSESDDPSAECDGDNTSIVTDSLPQTTHPTSICSDAKFVSSEVPYKKTVRIKNQTHVKAKKEQEKQILRATKSFRPSLSSRVSRTRNVNTSSLPPSNLSPSRSFLGSQSPASPSLPIPSRKKHDGNLSDTKTSVRLKKMDQSTLPRYGSMADSSRMKKSQMTLNQSLSVGRMRRANTETDLKGLTRTNLLSTPRASTRSRKDGNVSVSDSGSRMPTGGFSPWALSPQSPHLRTNKATFHLSDYENSFVKKRGSMSPFATCGHVSD	856

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu7g02401	856	MobiDBLite	consensus disorder prediction	602	617	-	-
Vimu7g02401	856	Pfam	Protein of unknown function (DUF1221)	21	235	IPR010632	-
Vimu7g02401	856	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	254	502	-	-
Vimu7g02401	856	SUPERFAMILY	Protein kinase-like (PK-like)	264	524	IPR011009	-
Vimu7g02401	856	MobiDBLite	consensus disorder prediction	713	727	-	-
Vimu7g02401	856	FunFam	Kinase family protein	235	514	-	-
Vimu7g02401	856	MobiDBLite	consensus disorder prediction	573	617	-	-
Vimu7g02401	856	MobiDBLite	consensus disorder prediction	661	706	-	-
Vimu7g02401	856	ProSiteProfiles	Protein kinase domain profile.	227	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vimu7g02401	856	MobiDBLite	consensus disorder prediction	646	660	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g02401	Vimu-Chr7	20590585	20593466	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g02401	275	501	MAP Kinase Kinase Kinase	AT5G58950	28.017	1.56e-22	100

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_Gdt	Vimu7g02401		PK_Tyr_Ser-Thr	4.8e-33	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g02401	-		-	vum:124844837	1598.95

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g02401	7	20590585	20593466	Vimu7g02401	7	20590585	20593466	ECH

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