Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu7g02394 | ATGGAAAGTGAAAAGAGTTGGGAGCAGAAAGCACTCGTGAGTGAGCTAATTCAGGGGTTGGAGATAGCAAGAAAGTTGAAGGAAGACTTCAATATACCCTCTTCCATTCACACCAGAGACTCACTACTGCAGAGTATATTGTCTTCTTACAACAAGGCTTTGCTTATTCTCAGTCAGAATGCACCATTTTCAAAGTCAGAAACCATGCATCAACCAACTCAAACTTCTTCACCACAGTTCCCTTCCAAAGATCACTATGAAGGTGCCCTCAATGATCATCAAGAACTTAAACAGAATGCAAAGAAAAGAAAGAAGATGCCCAAATGGAAGGAACGGGTTAGAGTGAAGATCCAGAATGGGGTTGAAGAACCTCTGCGAGATGATTACAGCTGGAGAAAATATGGACAGAAAAACATCCTCAATGCAAAATATCCCAGAAGCTACTACAGGTGTACATTCCAAAAATCTAAGGGTTGTTTCGCCACTAAACAAGTTCAGAGATCAGAAGAAGACCCCAATGTCTTTGACATAAGTTACCGAGGAAACCACGTCTGTTCTCAGGGAAAAGATGTCGTTCTGTCATTAAAGTTAGCAGATACAGAAGAGAAATCTCAAGGTTGTGACAGTGACATTCAGTTTCATCATGCACAGTCATCGCAAGAAAGAGTTACAAACTACACAAACACGTTGATTGCGGAAACGGATAACATGACCCAACATCCATTCCCTTCATTTGAATGCATGACACATGATAACCACCACACGTTTCTTCCTTCCTTTGTACTGGAGAATGATCCCTTTTGCAGCACCATTTCCCAAACATCCTTCTTCTCTCCGAACTCACCTGAATCAAATTATCTTGTGTCTCCGTCTTTTCATTCACATGATGAATTCGATAGGGTCTTTGACAAGCCGTGCCCTGATTCTGATGCTGTCGGGATAGTTTTAGCTGATGCACCAACCACCAATTCTTCAATTTTTGACTTCAATTTCTCACTCGATGCAGTGGGAATTGGTGCAAATTGCCCTTCAAGGCCTTGGGGTTTTCATCCTAAGTGCACTTGA | 1065 | 0.4188 | MESEKSWEQKALVSELIQGLEIARKLKEDFNIPSSIHTRDSLLQSILSSYNKALLILSQNAPFSKSETMHQPTQTSSPQFPSKDHYEGALNDHQELKQNAKKRKKMPKWKERVRVKIQNGVEEPLRDDYSWRKYGQKNILNAKYPRSYYRCTFQKSKGCFATKQVQRSEEDPNVFDISYRGNHVCSQGKDVVLSLKLADTEEKSQGCDSDIQFHHAQSSQERVTNYTNTLIAETDNMTQHPFPSFECMTHDNHHTFLPSFVLENDPFCSTISQTSFFSPNSPESNYLVSPSFHSHDEFDRVFDKPCPDSDAVGIVLADAPTTNSSIFDFNFSLDAVGIGANCPSRPWGFHPKCT | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu7g02394 | 354 | Coils | Coil | 83 | 103 | - | - | |
Vimu7g02394 | 354 | Gene3D | WRKY domain | 110 | 188 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu7g02394 | 354 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 5 | 250 | IPR044810 | GO:0003700 | |
Vimu7g02394 | 354 | MobiDBLite | consensus disorder prediction | 65 | 86 | - | - | |
Vimu7g02394 | 354 | SUPERFAMILY | WRKY DNA-binding domain | 124 | 187 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu7g02394 | 354 | Pfam | WRKY DNA -binding domain | 127 | 185 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu7g02394 | 354 | SMART | WRKY_cls | 125 | 187 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu7g02394 | 354 | ProSiteProfiles | WRKY domain profile. | 120 | 183 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu7g02394 | 354 | FunFam | WRKY transcription factor 53 | 111 | 188 | - | - | |
Vimu7g02394 | 354 | MobiDBLite | consensus disorder prediction | 65 | 82 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu7g02394 | Vimu-Chr7 | 20555063 | 20556289 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu7g02394 | 6 | 237 | WRKY Transcription Factor Family | AT4G23810 | 33.835 | 3.16e-41 | 145 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vimu7g02394 | WRKY | 3.1e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu7g02394 | - | - | vun:114174666 | 538.88 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu7g02394 | 7 | 20555063 | 20556289 | Vimu7g02394 | 7 | 20555063 | 20556289 | ECH | |
Vimu7g02394 | 7 | 20555063 | 20556289 | Vimu9g00133 | 9 | 1548217 | 1548774 | ECH | |
Vimu7g02394 | 7 | 20555063 | 20556289 | Vimu11g04509 | 11 | 66038635 | 66040151 | PCT |