Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02394 ATGGAAAGTGAAAAGAGTTGGGAGCAGAAAGCACTCGTGAGTGAGCTAATTCAGGGGTTGGAGATAGCAAGAAAGTTGAAGGAAGACTTCAATATACCCTCTTCCATTCACACCAGAGACTCACTACTGCAGAGTATATTGTCTTCTTACAACAAGGCTTTGCTTATTCTCAGTCAGAATGCACCATTTTCAAAGTCAGAAACCATGCATCAACCAACTCAAACTTCTTCACCACAGTTCCCTTCCAAAGATCACTATGAAGGTGCCCTCAATGATCATCAAGAACTTAAACAGAATGCAAAGAAAAGAAAGAAGATGCCCAAATGGAAGGAACGGGTTAGAGTGAAGATCCAGAATGGGGTTGAAGAACCTCTGCGAGATGATTACAGCTGGAGAAAATATGGACAGAAAAACATCCTCAATGCAAAATATCCCAGAAGCTACTACAGGTGTACATTCCAAAAATCTAAGGGTTGTTTCGCCACTAAACAAGTTCAGAGATCAGAAGAAGACCCCAATGTCTTTGACATAAGTTACCGAGGAAACCACGTCTGTTCTCAGGGAAAAGATGTCGTTCTGTCATTAAAGTTAGCAGATACAGAAGAGAAATCTCAAGGTTGTGACAGTGACATTCAGTTTCATCATGCACAGTCATCGCAAGAAAGAGTTACAAACTACACAAACACGTTGATTGCGGAAACGGATAACATGACCCAACATCCATTCCCTTCATTTGAATGCATGACACATGATAACCACCACACGTTTCTTCCTTCCTTTGTACTGGAGAATGATCCCTTTTGCAGCACCATTTCCCAAACATCCTTCTTCTCTCCGAACTCACCTGAATCAAATTATCTTGTGTCTCCGTCTTTTCATTCACATGATGAATTCGATAGGGTCTTTGACAAGCCGTGCCCTGATTCTGATGCTGTCGGGATAGTTTTAGCTGATGCACCAACCACCAATTCTTCAATTTTTGACTTCAATTTCTCACTCGATGCAGTGGGAATTGGTGCAAATTGCCCTTCAAGGCCTTGGGGTTTTCATCCTAAGTGCACTTGA 1065 0.4188 MESEKSWEQKALVSELIQGLEIARKLKEDFNIPSSIHTRDSLLQSILSSYNKALLILSQNAPFSKSETMHQPTQTSSPQFPSKDHYEGALNDHQELKQNAKKRKKMPKWKERVRVKIQNGVEEPLRDDYSWRKYGQKNILNAKYPRSYYRCTFQKSKGCFATKQVQRSEEDPNVFDISYRGNHVCSQGKDVVLSLKLADTEEKSQGCDSDIQFHHAQSSQERVTNYTNTLIAETDNMTQHPFPSFECMTHDNHHTFLPSFVLENDPFCSTISQTSFFSPNSPESNYLVSPSFHSHDEFDRVFDKPCPDSDAVGIVLADAPTTNSSIFDFNFSLDAVGIGANCPSRPWGFHPKCT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02394 354 Coils Coil 83 103 - -
Vimu7g02394 354 Gene3D WRKY domain 110 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02394 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 250 IPR044810 GO:0003700
Vimu7g02394 354 MobiDBLite consensus disorder prediction 65 86 - -
Vimu7g02394 354 SUPERFAMILY WRKY DNA-binding domain 124 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g02394 354 Pfam WRKY DNA -binding domain 127 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02394 354 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02394 354 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g02394 354 FunFam WRKY transcription factor 53 111 188 - -
Vimu7g02394 354 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02394 Vimu-Chr7 20555063 20556289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02394 6 237 WRKY Transcription Factor Family AT4G23810 33.835 3.16e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g02394 WRKY 3.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02394 - - vun:114174666 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02394 7 20555063 20556289 Vimu7g02394 7 20555063 20556289 ECH
Vimu7g02394 7 20555063 20556289 Vimu9g00133 9 1548217 1548774 ECH
Vimu7g02394 7 20555063 20556289 Vimu11g04509 11 66038635 66040151 PCT