Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02382 ATGTTGTGTCTGCTTCTGTTCATCATGTTTCTGCTTCCTCTCAGAGGAGAACCAACAACGTGCCAAGCAGCATCATGCGGCACAATCAAAATTCAGTTTCCATTTGGTTTGAGACAAACTCAAATGCAAAAGGAAACCTCTGGTCGGTGCAGCTATCCGAGATTCCAACTTTCCTGCGACAACCGTAACCGAACCATTCTGAGCCTCCCAGGTTCCGGCGATTTGGTGGTGAAAAGCATAAATTACAAGTCCCAAACCGTTAAGGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCACAACTTGAGCCTTTCCCTGCACCCACCGTTCACGTTTGAGGCAACCGTATACGACCTAACCTTCCTTCGTTGTCCTTCCAACACAACACACACCATTCCATCCCCGCCAATTTCATGTCTCAAGTCCAATTCCTCCTCCTCCGTCACATTCTCGTGGTGGCCTCTCAGCGGCACGCCACCGTGGAGTGAGGAGTGCGAGGTGATATCCTCGGCTTTTGTTCCCATTCCAAATCCAGACACGACATCGTTTTTCTTCCCCGATCTCAACAAGGATGTCGTGTTGAAGTGGAACGAACCCGCGTGTGGGGATTGTGCTGGTCGGGGCCAAGTTTGTGGGTTCACCGATGACACAAACAGTTTACAAGTTGGATGCTTCTTCTCTACTCGTAACCAAAACCAAGGTCTTTCAAGAAGCGCAAAATATGGCTTAACGATCGGAGTGGGAATACCTGGGCTCCTATGTTTAATTGGGCTTTGCTGCTTTATCTGTAGTAAATTCGATGTGTACTCACATGGTCACCGGGCCAGGCCCAGCACAGAGCTTCCAAGCTCTACCACCACTCTTCCACACTCCTCTTCGTTAGTGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCAAAGACTCTCATTGGTGACAGTGGACGCTTACCGAATTGGAGCGATAACACGTGTCCAATATGTCTCTCCGAATACGAGCCCAAGGAAACGCTGAGAACCATTCCTGCCTGCAACCATTATTTTCATGTACACTGTATAGATGAGTGGCTGAAGATGAATGCCACGTGTCCCTTATGCAGAAATTCAACTGATCCATCTTCTACCGTTACACCTCCTTCTCAGTCAACATCTACCTATTCATCTTTTTTGCCATAG 1179 0.4835 MLCLLLFIMFLLPLRGEPTTCQAASCGTIKIQFPFGLRQTQMQKETSGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYKSQTVKVNDPEGCLPKRFLHNLSLSLHPPFTFEATVYDLTFLRCPSNTTHTIPSPPISCLKSNSSSSVTFSWWPLSGTPPWSEECEVISSAFVPIPNPDTTSFFFPDLNKDVVLKWNEPACGDCAGRGQVCGFTDDTNSLQVGCFFSTRNQNQGLSRSAKYGLTIGVGIPGLLCLIGLCCFICSKFDVYSHGHRARPSTELPSSTTTLPHSSSLVGLNGPEIEKFPKTLIGDSGRLPNWSDNTCPICLSEYEPKETLRTIPACNHYFHVHCIDEWLKMNATCPLCRNSTDPSSTVTPPSQSTSTYSSFLP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02382 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 370 IPR046948 -
Vimu7g02382 392 MobiDBLite consensus disorder prediction 370 392 - -
Vimu7g02382 392 Pfam Ring finger domain 324 368 IPR001841 -
Vimu7g02382 392 SMART ring_2 326 367 IPR001841 -
Vimu7g02382 392 MobiDBLite consensus disorder prediction 279 296 - -
Vimu7g02382 392 Pfam Wall-associated receptor kinase galacturonan-binding 21 91 IPR025287 GO:0030247
Vimu7g02382 392 CDD RING-H2_EL5-like 326 368 - -
Vimu7g02382 392 ProSiteProfiles Zinc finger RING-type profile. 326 368 IPR001841 -
Vimu7g02382 392 MobiDBLite consensus disorder prediction 279 299 - -
Vimu7g02382 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 374 IPR013083 -
Vimu7g02382 392 SUPERFAMILY RING/U-box 320 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02382 Vimu-Chr7 20459343 20462393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02382 16 373 C3H Transcription Factor Family AT2G25410 34.877 4.04e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02382 - - gmx:102661206 340.887