Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02366 TCTTCACCAGAGTTCCGCCATTTCATTTCTTGTTCAGTGTCTTTTAAGGTTTCGTTTCTGATGGGTTCATGCGAAGCAACAAATGTGGTTCTTTCCAAGATTAAAAATTTTGATCCTGAGAATGCTTCAAAAATCATGGGTTATCTTTTGATGAACCTTGAAGAGTCTGAACTCATTCGTTTGGCATGTAGCCCTGACCCTGTGCTCCACACTCTCATTCTCAGGGTTAAGAGCCATATGGGTCTCGCACTCTCTACTCCTTCTTCTCCTTCTCTTCCTCCTTCACCTCTTAACCCCATAGCAAGACTCACTGCTTCCTCCACCAACCCATTTTCCAGAGCAGTACCCACCAACGGTTTTGACTTCGCAAGAAACCCATCTTCGCCTTCTTCTCACTCTCACGCTTGGAACTTCCCAAACAACAACCCCATTAGTCCAAAGTCCACTCCTTTACTCTCGTACGATAACATCCGAGCACTCTCACCGCGTGTCAACGGTGATTGTGATTTTGTCGACGAGCAGCAGGTGAATGAGTACTTTCCCTTCCTCAATGACTCCTCCAAGAACGAAGATTTGGTCGATCCACGCCTTGAATTGGGTGTTGGGGCTCAGAATTGGCACTCCGGGGACTCACATTTGCACAGGAGGAGTTACTCTGCAAGTGATGTTGGTTTTGGGTGTGAAGAAGCTTCCCCTGGACTTGGGTACAAGCCCTGCCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGCTCCAATTGCAAGTTTCTTCATGGTGCTTTCACTGATTCACTGGATGCCACTGTTGGCTCTCCTAGTAAGCTTGAGGGGATGGAACAGCAGCGTGATGATTTTGTTAGGTTCAAGGTCCCGCAGCTTCAGAGACTGGGTTCTGGGCCTTCTGCAACCGCACGTGAGAAGTACTATGAATTTTTGATGCAGGAGTCCCAAAGGGCGGCAGCAGCATTCATGATGGGGGAAGAATTCTCGAACTTTGGCTGGGATAGGCCTGAAAGGAATGACTTTTTAGCCGCAATTTCTGGCGATAAGCCCAACTCGGCCTCGCGACAGATTTACTTGACGTTTCCTGCGGAAAGTACTTTCAAAGATGAAGATGTCTCGGAGTACTTCAGGTATCGCTTCAATGTGTTTTCTGGCTCAGTTTCTCTTGTTAGGAAGCTTTGTCGAATAAGCAACAAATTCGGACCTGTTCAAGATGTGAGAATTCCTTATCAGCAGAAGCGGATGTTTGGGTTTGTTACCTTTGTATATCCAGAGACAGTGAGACTCATATTATCCAAAGGGAATCCTCATTTTATCTGTGATTCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAGAGACAACATCAACAACAGCAATTAGAGAGAGGAGATCTTTCACCATGTTTGAGCCCTTCTGGATTTGGCTCTAAAGAACCATATGATTTCCATCTTGGTAATCAAATTTCTCCTATCGACATTGTTGAAATCCTACAATATCGGTCTTGGTCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAGAATTGAAGAGCAGGCTGAATTGCAGCAAGTCCTTGAACTTCAAGAAAGAAGGCTGAAGAACCTACAGCTTCCCGACTTCAAGAATAATCCTATTCACCATCACCAACGCAGTCTTTCTGTTGGCAATCCTTTGGTCTTGCCCCATCAACTTCATGGTCACACTAATGATGCAGGTCTCTCTCCTGATAGCATTAAAGGAGATATTGCAGGCTATGGTGGCAGCTTCACTTCTACCAATTCTTTAGGTATTGCATCTGAGCAGCAGCAGAAAGAAGTTGAGCTAGATGCTTCTGAGAGTGGGAATACAAAGGATAGTGGAAATACCAAAAATGTGGATCTTAGTAATAGTGTGGAGCAGGCCCTCCCTGATAGTCTCTTCGCTTCACCAACAAAAGCAGCTGGAGATTATCATGCTGACTTCTCTACATTGGCAGAGGTCAACCATAGTGCTGCTTTTTCATCTACCTCATCTCATGACAAGCTAGAACCAGCAACCTCGTCTAGCGACTTGGCTTCCCGCTAG 2091 0.4519 SSPEFRHFISCSVSFKVSFLMGSCEATNVVLSKIKNFDPENASKIMGYLLMNLEESELIRLACSPDPVLHTLILRVKSHMGLALSTPSSPSLPPSPLNPIARLTASSTNPFSRAVPTNGFDFARNPSSPSSHSHAWNFPNNNPISPKSTPLLSYDNIRALSPRVNGDCDFVDEQQVNEYFPFLNDSSKNEDLVDPRLELGVGAQNWHSGDSHLHRRSYSASDVGFGCEEASPGLGYKPCLYFARGFCKNGSNCKFLHGAFTDSLDATVGSPSKLEGMEQQRDDFVRFKVPQLQRLGSGPSATAREKYYEFLMQESQRAAAAFMMGEEFSNFGWDRPERNDFLAAISGDKPNSASRQIYLTFPAESTFKDEDVSEYFRYRFNVFSGSVSLVRKLCRISNKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQHQQQQLERGDLSPCLSPSGFGSKEPYDFHLGNQISPIDIVEILQYRSWSRMLYNPHDILLRRRIEEQAELQQVLELQERRLKNLQLPDFKNNPIHHHQRSLSVGNPLVLPHQLHGHTNDAGLSPDSIKGDIAGYGGSFTSTNSLGIASEQQQKEVELDASESGNTKDSGNTKNVDLSNSVEQALPDSLFASPTKAAGDYHADFSTLAEVNHSAAFSSTSSHDKLEPATSSSDLASR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02366 696 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 21 655 - -
Vimu7g02366 696 MobiDBLite consensus disorder prediction 451 472 - -
Vimu7g02366 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 258 IPR000571 GO:0046872
Vimu7g02366 696 CDD RRM_AtC3H46_like 357 447 IPR034365 -
Vimu7g02366 696 MobiDBLite consensus disorder prediction 674 696 - -
Vimu7g02366 696 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 390 454 - -
Vimu7g02366 696 MobiDBLite consensus disorder prediction 451 465 - -
Vimu7g02366 696 MobiDBLite consensus disorder prediction 609 634 - -
Vimu7g02366 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 452 IPR000504 GO:0003723
Vimu7g02366 696 SMART rrm1_1 356 447 IPR000504 GO:0003723
Vimu7g02366 696 Gene3D - 229 308 - -
Vimu7g02366 696 Gene3D - 361 455 IPR012677 -
Vimu7g02366 696 SMART c3hfinal6 235 259 IPR000571 GO:0046872
Vimu7g02366 696 SUPERFAMILY CCCH zinc finger 236 258 IPR036855 GO:0046872
Vimu7g02366 696 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872
Vimu7g02366 696 SUPERFAMILY RNA-binding domain, RBD 393 471 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02366 Vimu-Chr7 20337412 20341705 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g02366 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02366 - - vra:106777575 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02366 7 20337412 20341705 Vimu7g02366 7 20337412 20341705 ECH