Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02361 ATGGGGTGCATCTGCTCAAAAGACTCCTCAAGCAAAGACAGAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGATTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTGGTAGAGGCACGGATGGTTCTGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCATAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCACCAGAAGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTTCGGATGGCCCATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTTATGGCAAGAGAAATATATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCTCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGATAAAATGTTTTATGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAACGGAAATCTTAAAATAGGAGACTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGAGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAGATGCACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACCCTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCCCCGGCATTGGCTCTTGTTGATAAGCTCCTCACAATTGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGATCCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATACCTGTGCCAAGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGCGGCAGTGTAGCAGGATCATCCACATTGAGTAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTTATTTGAATCCTGCAACAGCAGATTTATGTACATCTGCCGTCAAAAAGGAACCAGACTCATCTGCTGTTGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA 1914 0.4514 MGCICSKDSSSKDRVDEYEKEKEREKESNKSSVQLIAPSVSTAQSDSGRGTDGSVPLIVDTSTQAIRGSVIVTAEDKSNHSDATQGQHQKRVTVSCGVDDRMPMMSRILSVQHIAGEQVDFGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLSGLATVHGLKLTESQIKCFMQQLLRGLQHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGEAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQHPYNRQISETFEKFSSPALALVDKLLTIEPEARGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDSKRRQKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAQGNISMLRKPNSIMCRQKYLCQENREAKENGEGGRVSVHGGFTHAATMTRGSVAGSSTLSKRVEPSLKNQRSYLNPATADLCTSAVKKEPDSSAVESTMGYMPKKNRIHYSGPLMPPGGNLDDMLREHEKLMQDVFRSVKKANL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02361 637 FunFam probable serine/threonine-protein kinase At1g54610 133 228 - -
Vimu7g02361 637 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Vimu7g02361 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vimu7g02361 637 MobiDBLite consensus disorder prediction 540 563 - -
Vimu7g02361 637 MobiDBLite consensus disorder prediction 9 30 - -
Vimu7g02361 637 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02361 637 MobiDBLite consensus disorder prediction 1 56 - -
Vimu7g02361 637 MobiDBLite consensus disorder prediction 448 466 - -
Vimu7g02361 637 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02361 637 PANTHER CELL DIVISION PROTEIN KINASE 144 436 - -
Vimu7g02361 637 Gene3D Transferase(Phosphotransferase) domain 1 229 470 - -
Vimu7g02361 637 Coils Coil 15 35 - -
Vimu7g02361 637 SUPERFAMILY Protein kinase-like (PK-like) 139 438 IPR011009 -
Vimu7g02361 637 FunFam probable serine/threonine-protein kinase At1g54610 229 470 - -
Vimu7g02361 637 MobiDBLite consensus disorder prediction 31 56 - -
Vimu7g02361 637 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02361 637 CDD STKc_CDK9_like 146 430 - -
Vimu7g02361 637 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Vimu7g02361 637 MobiDBLite consensus disorder prediction 542 563 - -
Vimu7g02361 637 MobiDBLite consensus disorder prediction 432 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02361 Vimu-Chr7 20306376 20309758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02361 138 469 Core Cell Cycle Gene Families AT5G10270 51.437 5.12e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu7g02361 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02361 K08819 - gmx:100791743 935.636