Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02353 AATGGGGTTCTGGGGTTAGTCATCTTCGCTCTCCTTTTCTCTTCTTGCTCCTTCAATGTAGTTCTAAATGCACAAGCATTCGCTTCTAATTCTGAAATTGTCTCAGGGATTGAAGTCAAACCTGGCAAACCGTGTCCTTATCACTCTGACAATGTGCGAGGGAAATTGCACGTTACTCAGGCTACTCTAGGCATTGGCTCGTCGAAGGACAAAAGCATTCTTCAGTGCGCATCTGGACACAAAAGTCCAGTTTTCTTGTGTTCATTGCTACCAAATAGAATTGAGTCATGCCCTTTGAATCTTAAGTTTGACATTGATGACTTAGTTGCATTCTCAGTGATTGGTTCACGAAGCATCCACCTTTCTGGTTTTTTCGCGGCTGATGATGGAGATGAGCTTAAGGATGACTATGAATATGATTCATGGGGGGAAGACATTGAAGGAACTGATACAACTGAATCATCTGAATATGATAGTGAAGATGAATATGATAATGGCTTTATTGTTGATAGTGATGTTGATATTTACGGGTCTTCACCAGTCCCAAATAGTGGAGTTGTAATTGAAGAAATAGTGGATGATGAAAAACCTGAATCTGGAGATGATCAAAATAAGCAATCAAAGAAAAAGAAACAGTTAGCTAAGTTGAAACCAAAAGACAGCAAAATTTTCAAGTCTGAAATTGTTGCTAAGGGTGAGACTGACCTTGTGGAGAATGAAGATGAAGATGAAGATGGTTTTCCTATTTCCACTGCTGAGAAAGATGTCTCTATCTCTCAGAAGGCAGATGGAGAAACGAAAGGAGAACAAGCACTTAAGAAAATTGAGAATGCCAACAAGAAGAGAAAAGACGTCGATCATTCTGCTGGAGTTAAACGGAAGGTTGACAGTGCTGATGAAGATGAGCCACAGGATGGGAAAAAAAAGAAAAGAAATAAGTTAAAGGAACGTATTAAAGAGGAAAATGCTAATGCATCTGGCAATAGCAATGAGACAAATGTTATTGCCCCAGATGAAAAGCATCCAGAGGCTGTCAAAACTAAAACCAGCCAGAGTGATGTTTCTCATGCAAAGGATGAAAATGAGGGAAAATTGTCCAATAACGAGGTCAGTTCTGAGAAAAAAAAGAAGAAAAAAAAGAAGAAAAAGACTAAGGAGTTAGAAGGGGTAGCAGCTGCAGATCAAATTACTTCAAGTGCTGAAAAACAGAATTTGTCTGTTGTCTCAGAGAAAAAGGGGAAGAAACAAACTGAGACCAAGCCATCTCAAGTGAGAACTTTTCCGAACGGATTGGTAATAGAGGAGCTCCTTATGGGTAAACCTGATGGCAAAAGAGCTGCTCCTGGAAAAAAGGTCAGTGTTAAATATATTGGCAAGCTGCAAAAGGATGGGAAAATATTTGACTCAAATGTGGGAAGAGCACCCTTTAAATTTCGCTTGGGTGTAGGACAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGGATCGGGGACAAAAGAAGGATCACAATTCCACCATCTATGGGATACGCAGATAAGCGCGTTGGGACTATACCACCAAATGCGTGGCTTGTATTTGATGTTGAGTTGGTTGATGTTGATCGCTAA 1614 0.4033 NGVLGLVIFALLFSSCSFNVVLNAQAFASNSEIVSGIEVKPGKPCPYHSDNVRGKLHVTQATLGIGSSKDKSILQCASGHKSPVFLCSLLPNRIESCPLNLKFDIDDLVAFSVIGSRSIHLSGFFAADDGDELKDDYEYDSWGEDIEGTDTTESSEYDSEDEYDNGFIVDSDVDIYGSSPVPNSGVVIEEIVDDEKPESGDDQNKQSKKKKQLAKLKPKDSKIFKSEIVAKGETDLVENEDEDEDGFPISTAEKDVSISQKADGETKGEQALKKIENANKKRKDVDHSAGVKRKVDSADEDEPQDGKKKKRNKLKERIKEENANASGNSNETNVIAPDEKHPEAVKTKTSQSDVSHAKDENEGKLSNNEVSSEKKKKKKKKKKTKELEGVAAADQITSSAEKQNLSVVSEKKGKKQTETKPSQVRTFPNGLVIEELLMGKPDGKRAAPGKKVSVKYIGKLQKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKRVGTIPPNAWLVFDVELVDVDR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02353 537 MobiDBLite consensus disorder prediction 194 422 - -
Vimu7g02353 537 SUPERFAMILY FKBP-like 422 535 - -
Vimu7g02353 537 MobiDBLite consensus disorder prediction 217 235 - -
Vimu7g02353 537 Coils Coil 367 387 - -
Vimu7g02353 537 FunFam Peptidyl-prolyl cis-trans isomerase 424 537 - -
Vimu7g02353 537 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 444 533 IPR001179 GO:0003755
Vimu7g02353 537 Pfam Nucleoplasmin-like domain 36 125 IPR041232 -
Vimu7g02353 537 Gene3D - 389 537 IPR046357 GO:0003755
Vimu7g02353 537 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 72 536 - -
Vimu7g02353 537 MobiDBLite consensus disorder prediction 258 322 - -
Vimu7g02353 537 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 449 536 IPR001179 GO:0003755
Vimu7g02353 537 Gene3D Nucleoplasmin core domain 29 131 - -
Vimu7g02353 537 MobiDBLite consensus disorder prediction 194 209 - -
Vimu7g02353 537 PIRSF FK506-bp_FPR3 283 536 IPR023566 GO:0003755
Vimu7g02353 537 PIRSF FK506-bp_FPR3 80 292 IPR023566 GO:0003755
Vimu7g02353 537 MobiDBLite consensus disorder prediction 136 163 - -
Vimu7g02353 537 Coils Coil 304 331 - -
Vimu7g02353 537 MobiDBLite consensus disorder prediction 336 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02353 Vimu-Chr7 20255304 20259372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02353 449 533 Calmodulin-binding Proteins AT5G48570 51.724 4.35e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02353 K14826 - gmx:100792856 771.541