Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02351 ATGGACATGCCACCTTCCAGTTCGACCCGTGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACCCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGCGGCCGCGATGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGAGGCTCCGCACCAACCCCGCCCCGCCGGAAACTGAGATAGGAGGCGGTTCCTCGACGGCGCCGCCGCTGACGGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGATTGCCCCATGGACTCCCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTCGCAAATGGGTATGCCTTTGAAAACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG 555 0.6 MDMPPSSSTRVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETEIGGGSSTAPPLTVRLSPTQIQAINDCPMDSPQTWMQMPDTFMMHDQSMMFANGYAFENNEWEDMQNDSLWDP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02351 184 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vimu7g02351 184 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vimu7g02351 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 160 - -
Vimu7g02351 184 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vimu7g02351 184 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02351 Vimu-Chr7 20251161 20251715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02351 16 184 AP2-EREBP Transcription Factor Family AT1G71450 61.628 2.24e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g02351 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02351 - - gmx:100815719 343.584