Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02350 ATGCAACAATGTGGAATAGCCCCAACAGCAACATCGTATCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGAGCCGGGGAAGAAAAGCAGAATATGGTTGGGGAGCTACGAGTCGCCGGAGATGGCAGCAGCAGCTTATGACGTGGCGGCGTTGCACCTCAGAGGACGCGCCGCCAGACTGAACTTTCCTGAATTGGCGGAGACACTGCCACGTCCCGCCAGCTCCAAGTCCGAGGATGTGCAGGTGGCAGCACAGCAAGCGGCATTGAGGTTCACTAGGTCACCGACGATAAACAGTAGCAACAGAAACAGTAACAGTAAGAAGAAGAAGAATGAGAATAATGGTATGGTTCCTCTGCAAGTGGGTCTTTCGGCTACACAGATTCAAGCTATAAATGAGTCACCATTGGAGTCACCGAAGATGTGGATGATGCAAATGGCAGAGACGCTTAGGTTTGGGTTTGGTGATGAGTACTCTATGATGATGGTGTCTTGTGATGGTGATGATGATTATGCTATGGAGTTGAGTGGATGGGAAGAAATGCATTGTGAATCCTTATGGGACTCTCCTGAATATATGTGA 600 0.4933 MQQCGIAPTATSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRAARLNFPELAETLPRPASSKSEDVQVAAQQAALRFTRSPTINSSNRNSNSKKKKNENNGMVPLQVGLSATQIQAINESPLESPKMWMMQMAETLRFGFGDEYSMMMVSCDGDDDYAMELSGWEEMHCESLWDSPEYM 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02350 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 152 - -
Vimu7g02350 199 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Vimu7g02350 199 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Vimu7g02350 199 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Vimu7g02350 199 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Vimu7g02350 199 MobiDBLite consensus disorder prediction 97 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02350 Vimu-Chr7 20235999 20236637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02350 11 194 AP2-EREBP Transcription Factor Family AT1G71450 47.826 1.44e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu7g02350 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02350 - - vra:106777427 362.459