Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02333 ATGGAGAGTTCGGGGTTGGGTGCTGTGGATTGCGACGTTGGATCGATTGTGTGGGTTAGAAGAAGGAACGGTTCGTGGTGGCCGGGTCAAATACTGGGTCCCGATCACCTTTCTGCTTCTCATCTCACATCGCCTCGTTCAGGAACTCCGGTCAAGCTTCTCGGAAGGGAAGATGCTAGCGTAGATTGGTACAATTTGGAGAAATCCAAGCGCGTGAAGACATTCCGGTGTGGTGAATTTGATGGATGTATTGAAAGGGCAGAGTCTGCCCAGGGTATGCCCTTAAAGAAAAGAGAGAAATATGCTCGCAGAGAAGATGCTATTCTTCATGCTCTTGAACTCGAGAGGCAAATGTTAAAGAAACAAGAAAAAATAGGACTGGAGCAAGTAGGTGTAGCTCACCGATCAAAGAGGAGCAAGTTTGTTTATTTTCCTACCGAATCTAGTGATTCTCTGGATTACAAGGAGATTCCTGCCAATGTTGCAATGTCAGCTTCCCAACTCGGAGGGGATTATGCTTATTGCAGTTCTTTGGCCGATGAGAGTGAATCTGCTTTTATGGATGTTGTTGAATCTGATTCTTTTGAAATTGGTTCTGCTAATGCTGATTCAGATTCCTCTGAAATGGAACTTGACAAAGACGACGAGACGATTACACTTTCAGAAACTTGTCATGACACTGAAGAACAAGAAAGCACTAGTAGTGAGGAACTTGACGAGTTGACAATTTCTCGCAACATTCCTCACATATATCCTCGTGAGCATATATCAGGTAATGAAGCAGTATCCAAATGGAAATTAAAAGGAAAAAGGAATAATCGTAATCTTGTGAAGAGGTCTGTTGGTGCTCCTGATGGGAGAGGTGTTGTTTTTTACGGAGCAGATGATGTTGAAGGACCGAGAAGTCGTTTAAATCACAGGAGATTGGATCGGAGTTTGCATTACTATGTGAATGATATTAGTGATGTTTTTGATGACCCAGATCAGAAGTTTGGGTTTGAAGACGAAGATTCTCCAACTTCCAAAGCTCTAGGAAAAGGTAAAAATAAAATTGGTCACGGTGTTGAATGGGATGAATGGGCTTGGGAAGATCAGACTGCTCTAAAAGGATATTGGGAAAGTAAAGGGTTTGGTCCATTAAATGGTGATCGTTATAATTTTGATGGAAGGAGGTCGATGCTGGTTGATGTAGACTTGAAGGTTCAAGCAAGCTATAGGAAAGCGCCTGTCCCCATTGTTTCTATCACAAGTGAGCTAGATGGGAAGTCAATAATAGGGCACCCAATCCAAATTGAGGCCCTTAAGGATGGTTCATCGGATAGTCTTTTTTCTGTAATTGATGACTTTAGTAACGAGGGGATTGGCTTTGAGGGAAGTAGTGTACTTCCACCCGCTTGGAGAACTGCAAGGAGAACAGCAAATTTTCGTGTTCCTCGCCCCCTTGTATTGTCATCTAACGATGTTGAGAGGGATGCAGATTTTTCCATAGATCAAGAAAGAAGTGTTGAGTATAAGAAATTAAATGATGGAAGTTCCAGTCATAAGGCAAACCTTTCCAGGAAGAGTGGCCTCAACGGTCCTGCACCCTCGGTAGATAAGAAGTCCACAAAAAAGATGCCAAAGAAAGTGAGCTTGTCATCATCAAGTCAGAAAACTAGAACTCTGTCCTCATTATCTATTGAAAGTAATCTTGTTCCGTTTTGGTCTGTTTGTTGCCGCAGCGAGGGAGTGCCCTGCCCTAGTTCTCGAGCTTGCCTTCTAAGCGACCGAGAAATCCATTTGTTTCTCTCTGCTGTTCCGATTTTGAAACTGGGTCGGAAGGCGGAAGCAATGGACGAGGGAAAGCATAAATCGAGGAAAGAAATTCACGAGGTGAAGGATGGAGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGATAGAGCTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACATGAAAGAGAGCGGAGTACTGATTCTGAAGACAAGCATGATAGAGACAGGGAGAAACGAAAAGATAAAGATAAGGATGTGGATAGGGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGACAGGGATAGGGATGACAGGGAGAGGACAGACAGAGTAAGGGAGAAAGAGAAAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCCGGGAAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGTGAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAAGAAAGAAGACGGTGATTACAAGAAGAGGGAGAGGGAAAGGAGTGTCAGCAAGCCAATCAGGCAATCCGAGGAACGTGAAGCAAGCCCAAGAAAAAAGAGTGTCGGAGATGATTCGGATACCAAAGATGGAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAGGAAGCAGAAAGAGAAAAGCATGGCGAAGTAAGTACTAACGAACCCGAGTTTGGAAAGACCTGGACACTAGAAGGGGAATCTGATGATGAAGAAGGACCGGGTACTGAGAAGCATGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATATGGAACCTAAAGATGTGACAGTGGTAGACACTGATAATGGGACAATTGCATCTGATTTACAGGAGGGAACTGTCGGTACACCTGAAGATGAGGAAATAGATCCATTAGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCCGTGACATCAGTAATTTCTGATAAAGCCATTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGAGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAAAAGCTTTCTTTAGTTGACCATTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAGGTGAAGGAGATTGCGAAGATTACTCCAGAAGAAGCTGCAGCATACAGGAAGCAGTTGGAACTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAAATCATGGCACCAGACTGGCCTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGACAAGCCTATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGCGGTCGGGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCATTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCGAAGGTGCTAGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGAGGTGCTGAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGCAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTTTTCTCTGCTACATTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGTTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTAGGGGAATGGTACGAGAAAGGGAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGCGATAGTCTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGGGCCAAGGACCAGACAGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGCAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGTTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGCAAAGGTGAACCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTGGCTTTAAATTTAATGAAGAGGAAGACGAGGTAAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGACGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCACAGATTCTTGCTGCCACCAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCGAATGGTGGACTACCTGTTTCTTTTCCGTCTGTTCTTGGTCTCCAGACCCCAACAGTCTTGCCTGGGACTGGGCTACCCCTTGCGGCAAATGATGGGGCAGCTCGAGCAGCACTGGCAGCGATGAACCTGCATCGCAACATAGAAAAAATACAGTCAGAAGCATTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACTCATAAGGAAACATTAGGTCCCATATCTGATTGGACAGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAGATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAACAGTCTGTTAAGACAGCTAAAGCACAATTGAAACGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCAGGTGGAAATCAACCGGGCAAATACTCTGTTGTGTAA 5226 0.4411 MESSGLGAVDCDVGSIVWVRRRNGSWWPGQILGPDHLSASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKTFRCGEFDGCIERAESAQGMPLKKREKYARREDAILHALELERQMLKKQEKIGLEQVGVAHRSKRSKFVYFPTESSDSLDYKEIPANVAMSASQLGGDYAYCSSLADESESAFMDVVESDSFEIGSANADSDSSEMELDKDDETITLSETCHDTEEQESTSSEELDELTISRNIPHIYPREHISGNEAVSKWKLKGKRNNRNLVKRSVGAPDGRGVVFYGADDVEGPRSRLNHRRLDRSLHYYVNDISDVFDDPDQKFGFEDEDSPTSKALGKGKNKIGHGVEWDEWAWEDQTALKGYWESKGFGPLNGDRYNFDGRRSMLVDVDLKVQASYRKAPVPIVSITSELDGKSIIGHPIQIEALKDGSSDSLFSVIDDFSNEGIGFEGSSVLPPAWRTARRTANFRVPRPLVLSSNDVERDADFSIDQERSVEYKKLNDGSSSHKANLSRKSGLNGPAPSVDKKSTKKMPKKVSLSSSSQKTRTLSSLSIESNLVPFWSVCCRSEGVPCPSSRACLLSDREIHLFLSAVPILKLGRKAEAMDEGKHKSRKEIHEVKDGDSKRSHRDRDRDRAGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDKHDRDREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKERERKEDKERIRERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKEDGDYKKRERERSVSKPIRQSEEREASPRKKSVGDDSDTKDGEKKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSTNEPEFGKTWTLEGESDDEEGPGTEKHDTGMDVDEDDKPADMEPKDVTVVDTDNGTIASDLQEGTVGTPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSVISDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEIAKITPEEAAAYRKQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV 1741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02333 1741 Gene3D - 1314 1487 IPR027417 -
Vimu7g02333 1741 Pfam DEAD/DEAH box helicase 1128 1299 IPR011545 GO:0003676|GO:0005524
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 888 926 - -
Vimu7g02333 1741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1103 1131 IPR014014 GO:0003724
Vimu7g02333 1741 CDD KH-I_AtRH42_like 1639 1740 - -
Vimu7g02333 1741 SMART helicmild6 1364 1445 IPR001650 -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 541 556 - -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 1519 1550 - -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 981 1037 - -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 610 951 - -
Vimu7g02333 1741 ProSiteProfiles PWWP domain profile. 13 68 IPR000313 -
Vimu7g02333 1741 SUPERFAMILY Tudor/PWWP/MBT 12 116 - -
Vimu7g02333 1741 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1258 1266 IPR000629 -
Vimu7g02333 1741 Gene3D - 7 125 - -
Vimu7g02333 1741 CDD PWWP 14 114 - -
Vimu7g02333 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1485 IPR027417 -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 982 996 - -
Vimu7g02333 1741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1134 1312 IPR014001 -
Vimu7g02333 1741 Gene3D - 1055 1313 IPR027417 -
Vimu7g02333 1741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1340 1484 IPR001650 -
Vimu7g02333 1741 FunFam probable ATP-dependent RNA helicase DDX17 1065 1315 - -
Vimu7g02333 1741 CDD DEADc_DDX46 1092 1313 - -
Vimu7g02333 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1086 1314 IPR027417 -
Vimu7g02333 1741 Coils Coil 835 872 - -
Vimu7g02333 1741 Pfam PWWP domain 14 94 IPR000313 -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 1018 1033 - -
Vimu7g02333 1741 CDD SF2_C_DEAD 1324 1454 - -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 610 880 - -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 1519 1533 - -
Vimu7g02333 1741 SMART ultradead3 1122 1327 IPR014001 -
Vimu7g02333 1741 PANTHER T17B22.17 PROTEIN-RELATED 3 128 IPR044679 -
Vimu7g02333 1741 MobiDBLite consensus disorder prediction 505 556 - -
Vimu7g02333 1741 Coils Coil 718 765 - -
Vimu7g02333 1741 Pfam Helicase conserved C-terminal domain 1337 1445 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02333 Vimu-Chr7 20101084 20109986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02333 1090 1465 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 3.15e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02333 K12811 - gmx:100784306 1711.43