Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02321 ATGAAGCTGAAAACATACGCTGGTCTCAGTTTCATCGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAATTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAAAGGCTAAACGAGCAATCGTGGAGGGAAGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCGATGGTCACGGCATTGTTGTTGATTAAGGCTTTGCACTGGTTGGCTCAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCAGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAGGAGCTTACTGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCACTGTCTCCGGTCATGGCTGGAGCGGCAGCATACATGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGGAGCTGTAGGGCCGCAAGGATCACAGGCTGATGGCCAACGGCAAGGAGCTGCGACAGGTGGTGAAAGCACAGCTCAAAATGAGGCTACGGATAATTTGAGTAGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGTATGTTCTCCTGGGTACACTCTCCATCCTCCGGTGGCTGAATCTACTAATAAAGACAGTAGTGGAGGGCAGACTTCCCGCGAACAAACACAAAGTTGGTTTCTTACCACTGGTGGACCAACAAATGAATCTTATCCTCCAATGCAACACTTTCATCTTCTACCTTCCCAACCATATGCAGCCCTTGTCAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCCCATCTGGAAGCATATAGAAAACTCCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGGAGACAAGGTCTGACAGAAGTGTAGACGAGGGCACATCGTCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCGTCTGAATATGAGGAGATTCAAGATGGAAAAGCATATAGGAAGAAGAGAACACAGAAATCACAGCATGGCTCTAATGTGAAATCTGCTATTGATACTAATCTTGTAAATGCTTAG 1377 0.4444 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGNFKVRVADYIRYRKITSNMNDRFPDATPEELTASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTGAVGPQGSQADGQRQGAATGGESTAQNEATDNLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLHPPVAESTNKDSSGGQTSREQTQSWFLTTGGPTNESYPPMQHFHLLPSQPYAALVNYGKGFENDPNIPSSHLEAYRKLLQCQIQILQNQLEILQETRSDRSVDEGTSSSDSRGKSVISSSEYEEIQDGKAYRKKRTQKSQHGSNVKSAIDTNLVNA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02321 458 MobiDBLite consensus disorder prediction 233 266 - -
Vimu7g02321 458 SUPERFAMILY RING/U-box 163 227 - -
Vimu7g02321 458 Coils Coil 378 398 - -
Vimu7g02321 458 MobiDBLite consensus disorder prediction 231 266 - -
Vimu7g02321 458 SMART ring_2 183 220 IPR001841 -
Vimu7g02321 458 ProSiteProfiles Zinc finger RING-type profile. 183 221 IPR001841 -
Vimu7g02321 458 MobiDBLite consensus disorder prediction 443 458 - -
Vimu7g02321 458 CDD RING-H2_synoviolin 180 221 - -
Vimu7g02321 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 228 IPR013083 -
Vimu7g02321 458 Pfam Ring finger domain 182 221 IPR001841 -
Vimu7g02321 458 MobiDBLite consensus disorder prediction 399 458 - -
Vimu7g02321 458 PANTHER RING ZINC FINGER PROTEIN 1 144 - -
Vimu7g02321 458 MobiDBLite consensus disorder prediction 410 424 - -
Vimu7g02321 458 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 155 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02321 Vimu-Chr7 20008609 20013663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02321 146 423 C3H Transcription Factor Family AT3G16090 50.530 1.04e-73 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02321 K10601 - gmx:100816441 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02321 7 20008609 20013663 Vimu7g02321 7 20008609 20013663 ECH