Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02318 GCTGCCACCGCAGAGAGACGAGAGCACCGTCGCCGGCAGCGCCGAAACCCACGATTCAAAGTAAACACCTCCGGTAAGGGTGCCTGTGCTTCTGCACTCGACCTGATCCATTGCCTCATGGATCCTTTTGATGATCTTCTACCCGAGGCTCCTGTTGCACGCATTCGGCCGGGTACCAAGTTTGCTCCAAAGGCCAAAGCGAAACAGCGGCCACGAAAGGAAGTACCTTCGTCGGAACATGCCACCTCACCTAAAGAGGCTGGGAATGAATGTCAAAATGTAGGTCCTTCCACGCTAAGTGTGCCAGCGAAAGAATCTATGGGATTCATTCATCATACGCAGGTACAATTTCCAAATTCTGAAAGTGGAAATCCTGATCAAGATAGTGTGCAGGGAGATAGTGCAGCCTTGGTGGACAGTTCCACAATCACAGTACCTGAAATTGGTGCTGGTCAGAATTCTACAAACTTCTTAGAATCGGCATGTGAGGCTGGCCCAACAGATTTTGACGGGGACTCGATCACTAACTTCGTTTCTGAAACCAACCTCAATAATGGCACAACACAATCAGTTCACCCTGCTAATGTTGTAGAAAACAAATTGAATAATTTGGCTGCACCATTTTCAAGTTTCTCAACCATAGATAGGATGAAGGAACCCCCTAAAAATTGGGAAGGTTCATTTCTTGATATCAACAAATATTTGGAACTTATTGACAACTCATTGCAATTAGGCACGGATTTGAGCTTCGAAAGTGTTTCAGATAATAAAGTTGCAATAACTCAGACAGTTGATTCAAAGTCAAACATTGGGAAAGAACCAGAGGTATTATCTGCAGAGATTGAATTGGATCCTTTCAGTGACATCCTCCCTGATCTTCCTGCTAGGAATGCTCATAAATTTAAACCCAAGATTAAGCCACGACCTAGAGTAGGCAATATGCCAGCTTCTGCTTCATCTGATGTTATGATGGAAAAATCTGTTGAGTTGCCTACTTCATGCTCAACGGACTTTCAATCTTTTAAGTCAACTATTGTACTAAACCAATCAACCAGTTTACCTTTGCCAACGTCAGAGATTCTTAGGAAGACTTATATGCCCGATAAGTTTGGTAACACAAGCTCAAATGTTTCAATATCCGAAGATAGTAAGAGCTTGGCAGCAGCAACTCCTTCCCAATTGGATTCCCTAAATGCTATGCTTTCAGGGGACGCAGTTCATAATGGTACTAGAGATTGGCCTTCTACCTTTGGTAAATCATCTGGAGAGATTTTGTACATGAAGGCTGCAGACATTTTTTCTGGGTTGGAATCCCTTGATGACTTTCTCACCCAAGCTACTACTGATGCAGGAAAACCGGCTCTTCATTCTTTCAATGAGAAGGGTGCAGAGGAAAACTTTGTCCCACCTGTTTGTAATTCTATTAACTCCTTTAGGGAATGTGATAATACCCGAGTTCAAAGATGTCCTACACCACAAGATCCAGTAACCTTCAATGAAGCTACTGTTCTCAATGAGAGTGATACTCACACTAAGAATAGAATGTCGGAAACAGAGGAAATTGTGGACTTGAATCCCGCCTATCCAATAGATGATGCTTTTTATTATCAATCCATGAAATCTGTTGAAGATCCAACTTCTGGAATTCCAGTGCATGAAGACTTGACAAATGCTGCTGACAGTTCCACATTGGCTGATTTTTTGCATGCAAATGATTCAAGGGAAAAAGAAGTTGCTGATCAAAGGAATGGGGATGGCTCAGACTCATGTTCTCTGAGGAAGAACAAAAGATCTTCTATTTCTGGTGGGGAGGATAATGGTGGTAAAACCTCAAGGCAGCGGAGAAAACTCGCAGCATGTAAACCTAAAAACAGCTCATTGAATGAGGATGTTGAAGATGATAATGACATTGATCCTCCTTATCATTCTAACGAACATGAACTTCAAGAGAATGATGATGACTATGAAGTTGGTAATTCATCCAAGAAGAAGAGAGGATCAAAGAGTTCGCAGAAGAAATCTGTGGCCAAAAGTGGAAAAACTTCTCAAAGGCGTAAGAAGGCTGATGATGATGTACAAAAAACTAAGGAACCTCCTAAAAAGTTCTCTCATTCAACCCGACGAAAGAAAAGATGTGTGGACAAGGCTCTGCTAGAAATTCCTGAGGACGAACTTGATCCTCGAACATTGCCTATTAAAGATATTATTTTACTTGCAGAACACAGGGAGCGGCAAGCGAAAAAAGATGCGATGACTTCAAATATGTCTCCCTCCAATCAAAGGGCACGAGTCATGGAGGTAGAAGTGATTGTGGACCTTTTTCCATTAGTCCATGATGATGGGAGGATGCACTGGAGTGGTGGAGATTCTCTTCATGGGGCTGGTGCGTATAATGAACATGAGTTCTCAGGTTCAGAAGATGGTGAAGACCCATATGATAATCAAGACAATGAAAGGATTGCATCAACTTCCGTTCTATACAATTACCAGACTTTCATGGAAAAGACACCTAGGGGGAAATGGTCAAAACAAGATACCGAACTGTTTTATGAGGCTATTAGGGAGTTGGGTACAGATTTTTCTATGATACAACAGCTTTTCCCTGATAAAACCCGCCGTCAAATTAAGTTGAAATACAAGAAGGAAGAGCGGGAGCATTATTTACGGTTAAGAGATGCCATACATAACCGTGCGAAAGATCATTCTCATTATAAGTTGTTGATTGAACGATTGCAACTAGCTTCCACCAAGGCAGAGGAGGTTATGGACCCGACAACAGGAGCTAATGAAGAGGTTGTGGAGGCTGCAACAGTTAAGCATGACGCGGATGTTAAACAACAGGAAGATTCTGCGGCAGTTCAGAGTCCAGAGGAAAATGATGACAGTGAGGAGGAAGACTCTCTAAAATGGTCTCAGTATAAAAGTCTGTATTAG 2934 0.4237 AATAERREHRRRQRRNPRFKVNTSGKGACASALDLIHCLMDPFDDLLPEAPVARIRPGTKFAPKAKAKQRPRKEVPSSEHATSPKEAGNECQNVGPSTLSVPAKESMGFIHHTQVQFPNSESGNPDQDSVQGDSAALVDSSTITVPEIGAGQNSTNFLESACEAGPTDFDGDSITNFVSETNLNNGTTQSVHPANVVENKLNNLAAPFSSFSTIDRMKEPPKNWEGSFLDINKYLELIDNSLQLGTDLSFESVSDNKVAITQTVDSKSNIGKEPEVLSAEIELDPFSDILPDLPARNAHKFKPKIKPRPRVGNMPASASSDVMMEKSVELPTSCSTDFQSFKSTIVLNQSTSLPLPTSEILRKTYMPDKFGNTSSNVSISEDSKSLAAATPSQLDSLNAMLSGDAVHNGTRDWPSTFGKSSGEILYMKAADIFSGLESLDDFLTQATTDAGKPALHSFNEKGAEENFVPPVCNSINSFRECDNTRVQRCPTPQDPVTFNEATVLNESDTHTKNRMSETEEIVDLNPAYPIDDAFYYQSMKSVEDPTSGIPVHEDLTNAADSSTLADFLHANDSREKEVADQRNGDGSDSCSLRKNKRSSISGGEDNGGKTSRQRRKLAACKPKNSSLNEDVEDDNDIDPPYHSNEHELQENDDDYEVGNSSKKKRGSKSSQKKSVAKSGKTSQRRKKADDDVQKTKEPPKKFSHSTRRKKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERQAKKDAMTSNMSPSNQRARVMEVEVIVDLFPLVHDDGRMHWSGGDSLHGAGAYNEHEFSGSEDGEDPYDNQDNERIASTSVLYNYQTFMEKTPRGKWSKQDTELFYEAIRELGTDFSMIQQLFPDKTRRQIKLKYKKEEREHYLRLRDAIHNRAKDHSHYKLLIERLQLASTKAEEVMDPTTGANEEVVEAATVKHDADVKQQEDSAAVQSPEENDDSEEEDSLKWSQYKSLY 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02318 977 SMART sant 837 885 IPR001005 -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 82 99 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 937 977 - -
Vimu7g02318 977 Gene3D - 841 905 - -
Vimu7g02318 977 ProSiteProfiles SANT domain profile. 840 884 IPR017884 -
Vimu7g02318 977 CDD SANT 840 881 IPR001005 -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 796 816 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 57 99 - -
Vimu7g02318 977 SUPERFAMILY Homeodomain-like 839 885 IPR009057 -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 682 700 - -
Vimu7g02318 977 Pfam Myb DNA-binding like 831 912 IPR039467 -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 637 663 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 573 592 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 1 25 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 593 607 - -
Vimu7g02318 977 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 56 977 - -
Vimu7g02318 977 MobiDBLite consensus disorder prediction 573 710 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g02318 Myb_DNA-bind_7 2.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02318 K15198 - gmx:100792788 1129.78