Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02317 ATGGGAACACAACCCCGGCAAACATTTCGAGAGGAAGAGGAGGAGGAGCTGCCATGCCGTGGAACTATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTTAGGTTAAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGACAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGGAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAAGCAATGGTGCTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATCCGACGGAGGGTGTATGATGCTTTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTCAGCGATATTGAAGATCTAAAGAATGAACGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAGCTGGAGGATCAAGTAAGGACCACTATCAATAGTGGATTTAGTCTGGGTTTGAACTCCTGTGCCTAG 678 0.444 MGTQPRQTFREEEEEELPCRGTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVASKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKNERLGLRNRIEKKASYLQELEDQVRTTINSGFSLGLNSCA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02317 225 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Vimu7g02317 225 FunFam Transcription factor-like protein DPB 84 177 - -
Vimu7g02317 225 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Vimu7g02317 225 PANTHER TRANSCRIPTION FACTOR DP 21 209 IPR015648 GO:0005667|GO:0051726
Vimu7g02317 225 Gene3D - 83 179 IPR036388 -
Vimu7g02317 225 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Vimu7g02317 225 PIRSF Txn_factor_DP 4 221 IPR015648 GO:0005667|GO:0051726
Vimu7g02317 225 MobiDBLite consensus disorder prediction 1 92 - -
Vimu7g02317 225 MobiDBLite consensus disorder prediction 22 57 - -
Vimu7g02317 225 SUPERFAMILY E2F-DP heterodimerization region 179 210 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02317 Vimu-Chr7 19987802 19990584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02317 79 209 E2F-DP Transcription Factor Family AT5G02470 54.135 4.09e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu7g02317 E2F_TDP 7.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02317 K04683 - gmx:100781272 350.903