Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02314 ATGTTAAGTCTCGCTCCTTCAGTTGATACCAATAGTACCAAAGAGGTACCTGCAGCAAAAACAGAGCAGAACCAAATTCCTCAGACTACCCATATATTCAAATCAAAATTACCAGACATACCAATCTCCAACCACATGCCCCTCCATGCTTACTGCTTCGAAAACCTCTCCAAATTCGCCGACCGTCCTTGCCTCATCGTCGGCTCCGCCGCCAAAATCTACACCTACGCAGAGACTCACCTTATATCACGCAAGATTGCAGCCGGATTCTCGAACCTCGGCATCCGAAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCCTCTCCTTCCTCGCCGCCTCCATGGTCGGGGCCGTTGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGTTCAGCGCCTCCAAGGCGAAGCTCATCATAACTCAGGCAATGTACGTGGACAAGCTCCGCAACCACGACGGCGGATTGAGCCTCGGCGAGGATTTCAAGGTCGTGACCGTTGACGATCCGCCGGAGAATTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAACGACGTTCCGGAGGTGGAGATCCATCCGGACGACGCGGTGGCGCTTCCGTTCTCCTCCGGCACCACGGGGTTACCGAAAGGAGTGATTATGACTCACAAGAGTTTAACCACGAGCGTGGCGCAACAGGTGGACGGAGAGAACCCTAACCTCTACCTCACTACCGAGGACGTACTCCTCTGCGTGCTCCCGCTCTTTCACATATTCTCGCTCAACAGTGTGCTGTTATGCGCGCTGAGAGCCGGGAGTGGCGTTTTGCTGATGCAGAAGTTCGAGATTGGAACGCTGCTGGAGCTCATACAGCGCTACCGCGTGTCGGTGGCGATGGTGGTGCCTCCCTTGGTGCTGGCGCTGGCAAAGAATCCGATGGTCGCGAATTTTGACCTCAGTTCAATACGGTTAGTTCTCTCCGGTGCCGCTCCCTTGGGTAAGGAGCTCGAAGAGGCCCTCCACAGCAGGGTGCCTCACGCTGTTTTGGGACAGGGTTACGGGATGACAGAAGCAGGACCGGTCCTTTCCATGTGCTTGGGCTTTGCAAAACAACCATTCCCAACAAAATCTGGATCTTGTGGAACCGTTGTCAGAAATGCAGAACTAAAGGTGGTTGACCCTGAAACTGGTCGTTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGGCTACAGATCATGAAAGGATATCTGAACGACGACCAATCGACGGCATCCACCATCGACGCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTACGTAGATGATGATGATGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATTAAGTTTAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGCCTTCTTGTAAGCCATCCCTCCATTGCAGACGCTGCAGTTGTTCCACAAAAGGATGTTGTTGCCGGCGAACTTCCGGTTGCTTTCGTTGTGAGATCTAACGGCTTTGATCTAACGGAAGAGGCTGTGAAAGAGTTTATAGCCAAACAGGTTGTGTTTTACAAAAGACTGCACAAAGTTTATTTTGTTCATGCTATTCCCAAGTCTCCATCAGGAAAGATACTAAGGAAAGACCTGAGAGCAAAGCTAGAAGCCGCCGCCGCCGCCGCCACTCCGACGCCTTAA 1719 0.53 MLSLAPSVDTNSTKEVPAAKTEQNQIPQTTHIFKSKLPDIPISNHMPLHAYCFENLSKFADRPCLIVGSAAKIYTYAETHLISRKIAAGFSNLGIRKGDVVMILLQNSAEFVLSFLAASMVGAVATTANPFYTAAEIFKQFSASKAKLIITQAMYVDKLRNHDGGLSLGEDFKVVTVDDPPENCLHFSVLSEANENDVPEVEIHPDDAVALPFSSGTTGLPKGVIMTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSGVLLMQKFEIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVANFDLSSIRLVLSGAAPLGKELEEALHSRVPHAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGLQIMKGYLNDDQSTASTIDAEGWLHTGDVGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVVAGELPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLEAAAAAATPTP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02314 572 Pfam AMP-binding enzyme 54 467 IPR000873 -
Vimu7g02314 572 SUPERFAMILY Acetyl-CoA synthetase-like 42 563 - -
Vimu7g02314 572 Gene3D - 462 566 IPR045851 -
Vimu7g02314 572 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Vimu7g02314 572 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 559 - -
Vimu7g02314 572 MobiDBLite consensus disorder prediction 1 23 - -
Vimu7g02314 572 FunFam 4-coumarate--CoA ligase 2 463 564 - -
Vimu7g02314 572 Gene3D - 23 461 IPR042099 -
Vimu7g02314 572 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 462 - -
Vimu7g02314 572 Pfam AMP-binding enzyme C-terminal domain 476 551 IPR025110 -
Vimu7g02314 572 CDD 4CL 42 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02314 Vimu-Chr7 19967372 19971847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02314 27 474 Monolignol Biosynthesis Gene Families AT1G65060 70.953 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02314 K01904 - gmx:547492 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02314 7 19967372 19971847 Vimu7g02314 7 19967372 19971847 ECH