Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02310 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTAGACGATCCCTCCACCGATTCTGTCGTGTCGTGGGGCGAACACAACAACACCTTTGTTGTCTGGAACGTTCCCCAGTTCGCCACAGACATCTTGCCCAAACATTTTAAGCATAACAACTTCTCCAGCTTCGGATCGTGGTTTCTTGTTGTTGTGGGCTCGATGGATTTGAAGGGTTTTGTTGTTTTCTGTTGGGGTTTTAAGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTCTAAAAGGTATTAGTAGGCGTAAATCTGCCCACATAAATGGTAGTCAGCAACCATCTCAAGTGCAAAAGTCAGCTGCTAGAGCATGTGTCGAGGTGGGAAAATTTGGGCTCGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGCGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCACAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAATAAGAAACATATCACTGGGGCTAATAAAAAGAGAAGGCTCCACAGTCAGGAGAAGGATAATCTAACCACCAACAGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAACAATGCTGCAAAATCATTATTTCGCCAGATATTGCAGATAAACAATTCTACAACAACCCAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGACGATATCCCTTCTACCACCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACTGTTCCTCCTGTTTCTGAACTAACAAGTATGGAAGTAGACTCCCAGTTTCCTGTCAATTGTATGCCCAGTATATCCGAGACGCAATCTTCACCTGCTGTGTTGGGCTTTTGTCAGAGTCAAGGGGTGGAAACTGAAAGCAGTTTATTGAATCATAATCTGAATGGTGTGGAGAGGAGCATGGCGGAGATAGATGTGTCATCTGTCTTGGATGGACCGCACACTGTAGAAGCTGGTCATTCTTCACCCGATGCAGATGGAATTTCCCAACTCCCTGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACCTACAGGAGACGCAGAGGAAATTAAATTTAGCACTCTAGGATGTGGTCTGACTGAAGACCAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAATCTTACTAAACAGATGGGACTTCTTGCATCAAAAAGGCTAAGGGCACTATCACTCACTGCCACTGCCAGTACCGTTTCTCCACCGTCCGCCGCGTCCCTCGGCGGCCTGACCCGCCGTAATACGTCGCATCCGCCGTAA 1542 0.4533 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGEHNNTFVVWNVPQFATDILPKHFKHNNFSSFGSWFLVVVGSMDLKGFVVFCWGFKKVDPDQWEFANEGFLRGEKQLLKGISRRKSAHINGSQQPSQVQKSAARACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNENKKHITGANKKRRLHSQEKDNLTTNSLHSGLDGHVVKYQSSINNAAKSLFRQILQINNSTTTQSSIKNPDVFLIDDIPSTTIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCMPSISETQSSPAVLGFCQSQGVETESSLLNHNLNGVERSMAEIDVSSVLDGPHTVEAGHSSPDADGISQLPDIDDEFWELFFRPSPPTGDAEEIKFSTLGCGLTEDQGLPLERENEKKNVDKMQHVDNLTKQMGLLASKRLRALSLTATASTVSPPSAASLGGLTRRNTSHPP 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02310 513 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02310 513 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02310 513 SMART hsfneu3 11 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02310 513 Pfam HSF-type DNA-binding 15 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g02310 513 SUPERFAMILY "Winged helix" DNA-binding domain 12 118 IPR036390 -
Vimu7g02310 513 MobiDBLite consensus disorder prediction 226 246 - -
Vimu7g02310 513 Gene3D - 8 119 IPR036388 -
Vimu7g02310 513 FunFam Heat stress transcription factor B-4 7 119 - -
Vimu7g02310 513 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 308 IPR027725 -
Vimu7g02310 513 MobiDBLite consensus disorder prediction 487 513 - -
Vimu7g02310 513 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02310 Vimu-Chr7 19934941 19939320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02310 12 482 HSF AT5G16820 48.354 6.81e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g02310 HSF_DNA-bind 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02310 K09419 - gmx:100793665 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02310 7 19934941 19939320 Vimu7g02310 7 19934941 19939320 ECH
Vimu7g02310 7 19934941 19939320 Vimu3g03162 3 45386363 45386725 PCT