Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02305 ATGAGTAAAAGTAAATGCAATTTGTGGAGTGAGTGTGTGCAGATTCCTTTCAGGGTCGTTATCTATATGACTTTGTGTACGATGCCACCACAACATGATGGATACATCGTCACCTTATATATATCAAACACTTGTGTGGTAAATGTTAGTGTTATCATCCTCTTCAAGAACACTTCAAAGGTAATTGGTTTCTTTCTCTTTTTTGGTTTCTTCAATGAAATTGCATATCCTTATACTATATTGTTATTTCATCATGAATTAGTATTATTGCATGCAGTGGTGATGATGAGAACACCAAGCAGTGATGAAAGTGGGTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAAAATACTAGTGGATTACATTCAGAAGCATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAATAGATGTGGAAAAAGTTGCAGACTAAGATGGACTAATTACCTCAGACCTGATATCAAAAGAGGCAAATTCTCTGATGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGGCAGCTATAGCATCTCATCTGCCAGGAAGAACTGATAATGAAATTAAGAATCTGTGGAACACACATTTAAGGAAAAAGCTTTTGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTGATCACCTAAACCTTCTTACCAATCTACAGCAGATTTTGGAAGCTGCAAAAATTTTCAGCAGTTTCACAAACCCTTGTGACATAAACAATGCTCTAAGGCTGCACTCAGATGTCACGCAACTAGCCAAATTCCAGTTACTGCAAAACATGTTTCAACTCACTGGTGTCACTCCTTCTCCTTCCTCACTGACAGATGGTTTTCTGAATGATGTTTTAGGGTTTAATCAGTGTAGCAATCTCCAAAACCTTCATGATGGTAATTCAGTTTCTCAAATCCTTCCCAATTTCCAAAACTTTGAGGCCATTCAGCAGCCTTCACCATCAAATTCGCTTCCAAATCTGGTTTCTGCCTCCCCAGTAAAAGCAGAAAATGTTAATGCAAACTCAAAGGAGTGTTGTAATCCTTCTTCCACCAGCTTTGAGTTAACGTGGGGAGATTTCATGGATGAAGATGCAACTGATAATTATTGGAAAGGTTTCATAGAGTAA 1161 0.3928 MSKSKCNLWSECVQIPFRVVIYMTLCTMPPQHDGYIVTLYISNTCVVNVSVIILFKNTSKVIGFFLFFGFFNEIAYPYTILLFHHELVLLHAVVMMRTPSSDESGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNLWNTHLRKKLLQMGLDPVTHRPRTDHLNLLTNLQQILEAAKIFSSFTNPCDINNALRLHSDVTQLAKFQLLQNMFQLTGVTPSPSSLTDGFLNDVLGFNQCSNLQNLHDGNSVSQILPNFQNFEAIQQPSPSNSLPNLVSASPVKAENVNANSKECCNPSSTSFELTWGDFMDEDATDNYWKGFIE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02305 386 SUPERFAMILY Homeodomain-like 105 202 IPR009057 -
Vimu7g02305 386 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Vimu7g02305 386 FunFam MYB-related transcription factor 107 160 - -
Vimu7g02305 386 Pfam Myb-like DNA-binding domain 161 206 IPR001005 -
Vimu7g02305 386 Pfam Myb-like DNA-binding domain 108 155 IPR001005 -
Vimu7g02305 386 Gene3D - 163 210 - -
Vimu7g02305 386 FunFam Transcription factor MYB39 163 224 - -
Vimu7g02305 386 CDD SANT 110 155 IPR001005 -
Vimu7g02305 386 CDD SANT 163 206 IPR001005 -
Vimu7g02305 386 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Vimu7g02305 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 95 321 - -
Vimu7g02305 386 Gene3D - 107 160 - -
Vimu7g02305 386 SMART sant 160 208 IPR001005 -
Vimu7g02305 386 SMART sant 107 157 IPR001005 -
Vimu7g02305 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 155 IPR017930 -
Vimu7g02305 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 210 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02305 Vimu-Chr7 19895471 19896730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02305 95 386 MYB Transcription Factor Family AT5G16770 52.711 1.20e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g02305 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02305 K09422 - gmx:102660452 412.92