Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02296 ATGACTCAGAACACTGATATGAGACTTGAATCGGGAACTTGCAATGTGTGCTCGGCTCCTTGTTCATCTTGCATGCATCTTAATCATGCTCTCATGGGGTCAAAGGCTGAAGAGTTTTCTGATGAAAACTGTCGCATAGGAGCGGCTGTTGATCAGTATTCTATGGATGAGGATAATGCATATTCTCTTAGGAGCAGAGCTTGTGAAAGCTCACAACAAACTGTCAGCGAAGCAAGTAATATGCAGAGTGTTAATTTAAGTCAAGATGCTCTGTCTGAAAATGCCAAGAGTAGACAGATCATACTGAATAAGTATCAGGATTCCAAACATTTAGAAGGTCATGATGACAACACTTCTTGTATTAGTAGATCCAGTGATGCTAATTTAGTGAATGTTAGCCATCAAAGGAATGAAGAACGAATAACAATGCATGAGGAGAGGGGTTCATGTTCTCTTGTGTCAGAAAAATTTTCTGAATGCACCATTGAGAATTTTAGTTCTTCATGTACCAAGGAAAGAGAACCTGTTGTTTCTGGTGAGAAATGTACTACGGTTAAGGATGGTCTTATTGAGAGTACTTCCAACGTTTTACTAAAGGTATGCCCAAAGTTAGAAGCAGACACTGACGTCTCTGAAGCTAACAATGAAGATCCTAAATGTTCAGTTCAAGATGGACAGTGTGAGAAAGCTGCAGAGCTGGTTAAATCGCCTGCGAAGCGGGAAACTCAATCTGAAGATGAGAGTGATGAATCAGATGTTGTGGAACATGACGTAAAGGTGTGCGACATCTGTGGAGATGCTGGTCGGGAGGATCTACTTGCTATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACCTACTGTATGCGAGAAATGCTTGAGAAAGTTCCTGAAGGGGATTGGTTGTGTGAAGAATGCAAAGACGCAGAAGAGAATGAAAATAAAAAACCGGACGTTCAAGCATCCATATCTATGGCTGTATCTGACATTTGTGGAATGAAATTTTGTGGTTCAGATGTTGAAGACAAAAAAGTTGTTGAAGTTAGTTCAACCTCACAAGTTACTGGCAAAAGACTTTCTGATAACATTGAAGTAGCTCCAGCAGCAAAAAGACAAGCTCTTGAATCAAGCACAGGATCGCCAAAGACATCAAGCCCCAAGAGATTAGTTCCACTGTCCCGAGAATCTTCATTTAAGAGCTTAAATAAATCTAAAGTGAAGCCTGGTCTTCTGATACCTAGTCGAAACAACTCTGGTGGTAGTGACTTAGAGATTGCTCGCTCTCCTTCCACTGGTCCCAGGGGTCAAACTTCAAAGGGTATGTTAATGAAATCTAATTCATTCAGCAATGTAAATTCGAAGCCAAGAGTCAAACTTGTTGATGAAGTTGTTCCCTCCAAACCAAAAGGGGTTAATGAACATGCGTCAAAGAACATGGAGATGCCTGCTCGACCGACGGGCAAATCAACATTATTCAAATCTCCAAGTCTGGGGAGAACAAATGCAACTGAATCAAAAGTTAAAATGCTTTCACCCAAGTCTGCAGCTGTGCAGGATTTGAAAGGATCTAGGCATTTAAAAGAATCAGGTGCAATTGATAGGAAATTTCCATCTAGGATTGATCGGCCTGCGGTTAGTTCTGTTGTTTCCAATGCTAAGGGTGATCAAAGGCTCACACCTCGTGCTGAATCCAGTAAACCTTCAACAATGAACAACAATCGAGAGTTAAAGGCTAATCAGGATGGAAAAGCAAATGCATTATCAAGGTCAACGAGCAATATTAACCGGAAAAGTCTGGAGCCTCAAATTATTTCAGAGAGAACATCAATCCGTATTGATGAAGCTCAACAGGATGTGCTGCCTCGAGCACGGGAGACAGCTAATCAGATTGAGAAAAGCAGAGATAGTTCTAGTGATCGCGTAAGGCCAGCGGTTCCTACTTCAAAACCCCCATTCTGTCAAAAATGTAAGGAATTTGGCCATGCTATGGAATGTTGCAGTGTTGGCACTACACAAGAATCTGGTGCTGAAATATCTGTAACTACGTCAAGTAGTTCAAAAGAGGAAATGCATAAAGGCAATATATTGAAAGCTGCAATTCAGGCTGCACTTCTGAGAAGGCCTGAAATTTACAAGAAGAAAGAAGTATCTAACCAAACTGATGAGGTTTCTACCTCAGGCACAGATTTAAATTGTGAAGTGACTTCAAATGACCCAGTGTTGGTTTCCAGCACACTGAAGAATAGTATATCTGCTGAAGAAACCCCTGAACAACAGGAAACCCTTGAGAACTCTACCTCAGATTCTTCCAAATCTTCTTCTGCCAATGATTTTAAGCAACTAAAGTCTTGTCCGACTGATTCTCGATCCCAACCAGGAAAGTCAGCTTCTAATTGTCTTGCAGCTGGAAAAACTGTAGTGAAAGACATGTCTGATAAAGCCGTGACATTGTCGATTGTTCCTTCAAAGATGTTGGCCTTTCCTGAATACGAATACATATGGCAGGGTGCCTTTGAAGTGCATAGAAATGGAAAGCCTCCTGATTTATATACTGGACTTCAGGCGCATTTATCTTCTTGTGCTTCTCCTAAGGTTCTTGGAGCAGTGAACAAATTTCTTCCTAGAGTTTCTTTCAATGAAGCTTCTCGCTTGAGCATGTGGCCTTCGCAATTTGATCATGGTGGTGTTACTGAAGATAATATAGCTCTATACTTCTTTGCCAGTGATGTTGAAAGGCATGTATATGGATATTATTCTTATATTGACTGTAGAGCATGA 2778 0.4107 MTQNTDMRLESGTCNVCSAPCSSCMHLNHALMGSKAEEFSDENCRIGAAVDQYSMDEDNAYSLRSRACESSQQTVSEASNMQSVNLSQDALSENAKSRQIILNKYQDSKHLEGHDDNTSCISRSSDANLVNVSHQRNEERITMHEERGSCSLVSEKFSECTIENFSSSCTKEREPVVSGEKCTTVKDGLIESTSNVLLKVCPKLEADTDVSEANNEDPKCSVQDGQCEKAAELVKSPAKRETQSEDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPEGDWLCEECKDAEENENKKPDVQASISMAVSDICGMKFCGSDVEDKKVVEVSSTSQVTGKRLSDNIEVAPAAKRQALESSTGSPKTSSPKRLVPLSRESSFKSLNKSKVKPGLLIPSRNNSGGSDLEIARSPSTGPRGQTSKGMLMKSNSFSNVNSKPRVKLVDEVVPSKPKGVNEHASKNMEMPARPTGKSTLFKSPSLGRTNATESKVKMLSPKSAAVQDLKGSRHLKESGAIDRKFPSRIDRPAVSSVVSNAKGDQRLTPRAESSKPSTMNNNRELKANQDGKANALSRSTSNINRKSLEPQIISERTSIRIDEAQQDVLPRARETANQIEKSRDSSSDRVRPAVPTSKPPFCQKCKEFGHAMECCSVGTTQESGAEISVTTSSSSKEEMHKGNILKAAIQAALLRRPEIYKKKEVSNQTDEVSTSGTDLNCEVTSNDPVLVSSTLKNSISAEETPEQQETLENSTSDSSKSSSANDFKQLKSCPTDSRSQPGKSASNCLAAGKTVVKDMSDKAVTLSIVPSKMLAFPEYEYIWQGAFEVHRNGKPPDLYTGLQAHLSSCASPKVLGAVNKFLPRVSFNEASRLSMWPSQFDHGGVTEDNIALYFFASDVERHVYGYYSYIDCRA 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02296 925 MobiDBLite consensus disorder prediction 715 735 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 373 403 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 749 797 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 623 639 - -
Vimu7g02296 925 SUPERFAMILY FYVE/PHD zinc finger 247 309 IPR011011 -
Vimu7g02296 925 PANTHER - 258 913 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 233 252 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 414 449 - -
Vimu7g02296 925 ProSiteProfiles Zinc finger PHD-type profile. 258 309 IPR019787 -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 720 735 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 370 449 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 623 647 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 520 540 - -
Vimu7g02296 925 SMART PHD_3 260 307 IPR001965 -
Vimu7g02296 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 322 IPR013083 -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 489 508 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 479 600 - -
Vimu7g02296 925 MobiDBLite consensus disorder prediction 549 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02296 Vimu-Chr7 19862858 19866410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02296 257 306 C2H2 Transcription Factor Family AT3G01460 38.000 6.85e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02296 - - vun:114172977 1598.18