Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02286 ATGAGTACTGCCGGGTGGTCAGATGAGGAACGCTCTGTCATTGGAGATAAGGCTGAAATTGGGTTTCTAGATTTTGAGGAAGAGAAGTCTGTTTGCAGTGACTTTGATTATGAAGGGGTTCCTGTTGTTGTATCTGCCCCATTTCCATTTGTGGATGGCAAGCCTCAATCTGTATTTATAGGGGACACTGCTGTGGGTTTAATAACCGTTAGGAATACTACTGATGAACCAGTGGACCTGTGGAGTGTTCATATTTTTGCCTCAAATCCTACGGACAGTTTCACTCTCTCTCTTACAGAACCTCTACCGGAAAATTCAAATGCAGAAGGAGAACAGAGCTGCTTAGAATCTTTCACTTTGGAGGACAGGGTGCTTCAACCTCGTGAAAACTTGAAAGTATGGCTGTCTTGCAAGACAAAAGAAATTGGCATGTGTTCATCAGTCATATATTTTGATGCTGGAGATGAAAAAATTGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCTTTGGCTTCTAAGAGGCCCTATTCAAGAGCAAAGAAAAAGGACAAATTTGTTGTGGATACTTATGTTCCAGGTATACGTCCTGCAGGGAAGCCAACTCGAAGATACATTAATAGGCTTCCGAAATATAACATTCCCAGGGACATGAGAGACTTGCTTGAGAATAATCAGATCCCTCAAGTTGTTGAAGAAGGTCTTACTAGAAGGACTTATTCATCTTATTTCAAAACATTAATAATAATGGAAGAGATCCAGTTGGAGGAAGACATGAGGATTTATGATATGGAATCTATATCGATGAGAAAGAGGAACAATCGATTTTTGTCTATGGAGGTTCCTGGGCTGGCTGAGAGAAGACCATCTCTGGTTCATGGGGATAGTATATTTGTTAAGCTCGCATATGATAATAGCAACAGACGGCCTAATGAGGGCTTTATCCACCGAGTTGAAGCTGATGAAATTTATTTGAAGTTTGATCCTGAATTTCACTTTAACCACAAGGACGAAAATATGTATGATGTTCACTTCACCTACAACAGGATCAATATGAGAAGGCTATATCAAGCAGCTGAGGCAGCAGAAAACTTGGGTACCGACATCCTCTTTCCATCTACATCACAAAAGAGACACATTAAAACTACTGCTCTAGTACCGATATCTGGTACTTTTAACGAGGAGCAAATTTGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCACCTTATTTGATTCATGGACCCCCTGGTACGGGAAAGACAAGGACAATAGTAGAAGCAATCCTGCAGCTCTACAAATATCACAAGAATGCTCGGATTCTTGTGTGTGCACCCTCAAATAGTGCAGCAGACTACATACTGGAGAGACTCCTTACTCAACAGGACATTGAGTTGCGAGAAAATGAAATATTTAGGCTCAATGCATCTACCAGGCCATACGAAGATGTTAAACCTGAAATTATCCGCTTCTGCTTCTTTGATGATATGGTATTTAAGTGTCCCCCAGTGGACGCCCTCGGTTATTATAAGATCATAATATCTACATATATGAGTGCCTCTCTTCTTTATGCTGAAGATCTTGCCCGTGGTCACTTTTCACATATTTTTTTGGACGAGGCTGGCCAAGCTTCTGAACCCGAAACCTTGATCCCTGTATCCCACCTCTGCACCTTGAAAACTGTTGTTGTTCTGGCTGGAGACCAATTGCAATTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTTTGGTTTGGGGGTTTCATATATGGAACGATTGTCTGAACTTCCGCTATATGCCAGTGGAGATACTAATTATGTAACACGATTGGTTCGGAACTATCGATGTCATCCAGCAATATTGCATCTTCCTTCAAAGTTGTTCTATTGTGGGGAATTGCTTGCTTGTAGAGATTCCACAACTTTCCTGACGATGGGGGAGTTGCTGCCTAATAAGGAATTTCCTATTCTTTTCTGTGGCATCCAAGGATGCGATGAAAGAGAAGGAAATAACCCATCGTGGTTCAACCGTATTGAAGCCAGTAAGGTTATAGAAGTTGTCAATAGACTGATTGTAGGAGGGAAAATAAAGGAGGAAAACATTGGCATAATAACTCCATACAGGCAACAAGTGTCAAAAATAAAACAGACACTTGAAAATCTAGATATGCCTCACATCAAAGTGGGTAGTGTCGAGCAATTCCAAGGACAAGAGATGGAGGTTATTATAATATCAACAGTTCGATCAACTATCAAACATAACGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAACGTGGCTATAACTCGTGCTATATCATTGCTGGTTATAATTGGGAATCCGCATATAATCTGCAAGGATGACTATTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTACCAGGGTTGTTCTCTTCCTGAGAGGGTGGAACCTTATGACGATGAAGACACTGGAGAGAACCCATACTCGACTGAAGATAATGCTTGGCCCTCAGATAACGCAGAATGGGGTCAAGATTCATCAAACAATGCAGAATGGGGCCAAGATTCTTCCCAGATAGGGCTCCCTAAACCTGTTACCGATGAAGCTGAGTGGTCAGATGGCTGGAGAAGTAATTAA 2664 0.4125 MSTAGWSDEERSVIGDKAEIGFLDFEEEKSVCSDFDYEGVPVVVSAPFPFVDGKPQSVFIGDTAVGLITVRNTTDEPVDLWSVHIFASNPTDSFTLSLTEPLPENSNAEGEQSCLESFTLEDRVLQPRENLKVWLSCKTKEIGMCSSVIYFDAGDEKIERVVFLLVEDKISKSLASKRPYSRAKKKDKFVVDTYVPGIRPAGKPTRRYINRLPKYNIPRDMRDLLENNQIPQVVEEGLTRRTYSSYFKTLIIMEEIQLEEDMRIYDMESISMRKRNNRFLSMEVPGLAERRPSLVHGDSIFVKLAYDNSNRRPNEGFIHRVEADEIYLKFDPEFHFNHKDENMYDVHFTYNRINMRRLYQAAEAAENLGTDILFPSTSQKRHIKTTALVPISGTFNEEQICSIKMILGCKGAPPYLIHGPPGTGKTRTIVEAILQLYKYHKNARILVCAPSNSAADYILERLLTQQDIELRENEIFRLNASTRPYEDVKPEIIRFCFFDDMVFKCPPVDALGYYKIIISTYMSASLLYAEDLARGHFSHIFLDEAGQASEPETLIPVSHLCTLKTVVVLAGDQLQLGPVIYSKKADEFGLGVSYMERLSELPLYASGDTNYVTRLVRNYRCHPAILHLPSKLFYCGELLACRDSTTFLTMGELLPNKEFPILFCGIQGCDEREGNNPSWFNRIEASKVIEVVNRLIVGGKIKEENIGIITPYRQQVSKIKQTLENLDMPHIKVGSVEQFQGQEMEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDYWSQMLWYCVDNSSYQGCSLPERVEPYDDEDTGENPYSTEDNAWPSDNAEWGQDSSNNAEWGQDSSQIGLPKPVTDEAEWSDGWRSN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02286 887 Pfam AAA domain 592 793 IPR041679 -
Vimu7g02286 887 Gene3D - 620 820 IPR027417 -
Vimu7g02286 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 804 IPR027417 -
Vimu7g02286 887 FunFam Probable RNA helicase SDE3 620 818 - -
Vimu7g02286 887 Pfam AAA domain 395 490 IPR041677 GO:0004386
Vimu7g02286 887 Pfam AAA domain 515 583 IPR041677 GO:0004386
Vimu7g02286 887 Gene3D - 320 604 IPR027417 -
Vimu7g02286 887 CDD DEXXQc_Helz-like 396 620 IPR026122 GO:0003723|GO:0032574
Vimu7g02286 887 PANTHER CANCER/TESTIS ANTIGEN 55 116 380 - -
Vimu7g02286 887 FunFam Probable RNA helicase SDE3 345 489 - -
Vimu7g02286 887 MobiDBLite consensus disorder prediction 837 870 - -
Vimu7g02286 887 CDD SF1_C_Upf1 621 809 IPR047187 -
Vimu7g02286 887 MobiDBLite consensus disorder prediction 820 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02286 Vimu-Chr7 19821368 19825383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02286 394 551 Core DNA Replication Machinery Family AT1G08840 29.193 8.59e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02286 K18422 - gmx:100801796 1534.24