Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02274 ATGCGTGGAAGTGCGTGTTATGGGGTTGCGTACTCCACACTTCAGAAGGATTCACCTGTTTTCAATTATATCAACAGTTTGTCTCCTATAAAGCCCGTGAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCACCTCCATCCGTTTTCACATCACCCCACGTCAGCTGTCTCAAGGAATCTAGATTCCTCAGAAGACATATCCCATTGGGCACATGGAAGCCTAAGATTTCTTCTGAAGATGTAAATAAAGTTCACACAAGTGAAGAAGAGACTCTTGCAGATTCTAAGCGTGCCCATCATAACAAGAGTGAATCACAGGAGAACACTGAAAAAAGGGTTTCTCTAGGAGATGCTTCAATTGAGCTATCTAGCGAGCACATAAAATTCTCAGTTGAGCCGCAGCAAACTTTAAAGTATGACACTTGCGGTAGCCCTGGCTATGATCCCTCACTTTGTGATCATGAGGATAACACTCTTTTGGAACTGCCCGGTGAGGCAGCAGCAGATGCTGGCTACGTTCAGGAAGGGTGTAAAACTGATTCAGTCGAGAGCGAAGTTCATCTTCAGGAAATATGTCAGATGGAGCCAAAAAGTGAAGATCCAGACTGTTATTGGGATAGTTTAATTCCTGATGGCTCTGATATGCTAATTTTTAATTCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTGATGAACAAACCGTTGGACCCTTCTATACGACTGAGCGATTTTATGTCTGTGCTGCCACTTTCTGCTGTCCATAATGGTAGGAAAATGTTCATTGTTGATTCGGTTGCTTCAGGTTCTGAACATGAAATAGGAGATCACTGTTCTGAGCCAACGATCGCAGCCACGGACACGGATCAAACACGGGATAATCTTGCCGATGTTGTTTTGGTGACTAGCAATTATAACGAGAACGTAAATGATCAGCTTGTTTCTGTCACGCACCGTGCCATACGGAGGCGTTGTCTGGACTTTGAGATGGCCAATGTGCAAAAGAAGAACTCTGATGATAATTCAAAAGCCAGTTCAAGTACATCCGAGTCTGATGAGAGGAATGCTGCCAATGAAAAGCAACTTCTTCCAGCAAAACTCAATGGGAATTTTCAGAGGGGGATTTTGCAGGGAATTGGTCTACACCTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGAATACAAATTGAAAATTTGTCTTCTGGAAGACAACTCAGTCTGTCCAACTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACAGCAGCATCTATCGTTGGTTCCTGTATCATCTGAAAGAGATTTGGATTCATCAGACAATGGGCTTCAGCCTGCCGAAGATTGTTCCCAGCCTTCAGTTTACATGGCTGGTGAAGACTTCAATAAGAATAGCCCCAGAAAGAAAAAGCAAGTGCAGTTGTTGATTACTGTGCATTTCGATTGCTTCAACAAACCTGTTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGAAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTTCCTGAAACTGGGGATGATCCAAATAAAACTCCGGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCCAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTGGGTTGCTCCATTGGCTGTAGATGTGAAGGATGCAAGAATGCTTTCGGCAGAAAAGATGGTTCTGCTCCTGTAAGCATAGAAACTGAGCAAGAAGAAACGGAAGCAACTGACAAGGGTATAACAGAAAAAGCTTCACAGAAAACTGAAATTCAGAACACTGAAGATCATCCGGATTCTGCTACTATGTCAACACCATTACGACTCTCCAGGCCTATGCTTCCGTTGCCCTTTTCATCAAAGGGAAAGGCACCAAGATCCTTCGTTACCACCATCTCAGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGAAAAACAAACTCTCTTTGGTCTCAATCTAAGCATTTTCAAACTGTTCCAGATGATGAAATGCAGGATATTCTCCTAGGTGATACCTCTCCTATCACATGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCAAGCTGTGACATGGGATCATCTCCTAGTCGCAGAGGTGGCAGAAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2229 0.4338 MRGSACYGVAYSTLQKDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTWKPKISSEDVNKVHTSEEETLADSKRAHHNKSESQENTEKRVSLGDASIELSSEHIKFSVEPQQTLKYDTCGSPGYDPSLCDHEDNTLLELPGEAAADAGYVQEGCKTDSVESEVHLQEICQMEPKSEDPDCYWDSLIPDGSDMLIFNSPGEAEAFKGLMNKPLDPSIRLSDFMSVLPLSAVHNGRKMFIVDSVASGSEHEIGDHCSEPTIAATDTDQTRDNLADVVLVTSNYNENVNDQLVSVTHRAIRRRCLDFEMANVQKKNSDDNSKASSSTSESDERNAANEKQLLPAKLNGNFQRGILQGIGLHLNALAALKEYKGIQIENLSSGRQLSLSNSTSLQISTSQEQQHLSLVPVSSERDLDSSDNGLQPAEDCSQPSVYMAGEDFNKNSPRKKKQVQLLITVHFDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPETGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSAPVSIETEQEETEATDKGITEKASQKTEIQNTEDHPDSATMSTPLRLSRPMLPLPFSSKGKAPRSFVTTISGSALFASQKLGKTNSLWSQSKHFQTVPDDEMQDILLGDTSPITCIKTSSPNGKRISSPSCDMGSSPSRRGGRKLILQSIPSFPSLTPHP 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02274 742 MobiDBLite consensus disorder prediction 423 454 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 580 631 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 341 356 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 336 360 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 516 537 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 84 116 - -
Vimu7g02274 742 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 540 575 IPR005172 -
Vimu7g02274 742 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 485 741 IPR044522 GO:0003700
Vimu7g02274 742 ProSiteProfiles CRC domain profile. 485 577 IPR005172 -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 700 742 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 84 119 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 700 717 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 592 615 - -
Vimu7g02274 742 MobiDBLite consensus disorder prediction 423 452 - -
Vimu7g02274 742 SMART CXC_2 537 578 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02274 Vimu-Chr7 19769234 19774634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02274 16 741 CPP Transcription Factor Family AT4G14770 39.254 2.39e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu7g02274 TCR 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02274 - - gmx:100811662 822.387