Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02271 ATGGCGGTCGGAAAGAATAAGAGGATTTCGAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCCGATCCCTTTTCCAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTGTTCCAGGTCAAGAATGTGGGCAAGACCCTCGTCAGTCGTACACAGGGCACCAAGATTGCTTCGGAAGGACTCAAACACAGAGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGGGATGAGGACCATGCCTTCAAGAAGATCCGTTTGAGAGCCGAGGATGTTCAAGGAAAGAATGTTTTGACAAACTTTTGGGGAATGGATTTCACAACTGACAAGCTGAGATCTTTGGTCCGAAAATGGCAAACTTTGATCGAAGCTCATGTAGATGTGAAGACCACTGATAATTACAGTCTGAGGATGTTCTGCATTGGCTTTACTAAGAGGCGAGCCAACCAAGTGAAGAGGACTTGCTATGCACAATCGAGCCAAATTAGACAGATCCGCAGGAAAATGAGAGAGATAATGGTTAACCAGGCAACAGCCTGTGATTTGAAAGAATTGGTCCGCAAGTTCATCCCTGAGATGATTGGCAAAGAGATTGAGAAAGCAACATCAAGCATCTATCCCCTACAAAATGTGTTCATTCGTAAAGTTAAGATCCTGAAAGCTCCAAAGTTTGACCTTGGCAAATTGATGGAGGTTCATGGGGATTACTCGGAAGACGTTGGAACAAAGGTTGACAGACCTGCTGATGAAACAGTAGTTGAGGGAACAACTGAAGTAGTTGGAGCTTGA 786 0.4529 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYSLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMVNQATACDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETVVEGTTEVVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02271 261 MobiDBLite consensus disorder prediction 1 15 - -
Vimu7g02271 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
Vimu7g02271 261 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g02271 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vimu7g02271 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vimu7g02271 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vimu7g02271 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02271 Vimu-Chr7 19746605 19748604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02271 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.260 4.85e-164 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02271 K02984 - gmx:100818730 467.618