Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02249 ATGTCTTTGCCTATCTTTCTCCGTTCCATTCTCCTACTACTTTCATTTCTGAATGGTTTCCATGCCATTGTACAACCAAACACCAGCATCACTGCTGGATCAAACTCTACCTGGAAGTCAACCTCGGGTGATTTTGAATTTGGATTCCTCCATCTTCCCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCTCAGATATAACACTAGCATGGTACTTCTCTCCCCCTGTGGAACCAAATTCACAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTAGCCTACCAAAACGGAACTACTGCTATGACCATATACAATTCTGCAGAAGGCGATGCTGCAACTTCTGCCTACATGCAAGATGATGGCAATTTTGTGATCAAGGACTCCAACTTAGTGTCTGTCTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGCTGAGTACTAAAACCCTCTTTTCCAAAGGGGGAGGACCTTCAAACTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCTATGGGCAGATCCTGCATACTGGTATACTTCACCCATAACCGCTAATATGACATTGGTATTTAATGCTACCACTGCTCTCATGTACCGTGTCGACGATGCTGGGAACATCTTCAACCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAGCAATATTCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGCTATTTGTGGTGTGTATGGCTTGTGCAATTCTCCTGACAATGAATCAATCAATTGTGAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGTTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCTATTTTGATACTCATCTTGTTAGCTTAGCTGGCGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCTGAATGCTAGAAATAGCTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGATTCTGGGACGTCTGAAATTGCTAAGAAGAAAAGTTTTAATGTAAGAGTATTTTTGAAGGTTCTTGTTGCAGTTACTGCAAGTCTTGCCGGTTTCTTTGGTGCACTTGCTGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTTACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAAAGTCTATCGTGGTGCTTTAGTAATAGGTGATGCACAGATTGATGTAGCAGTAAAGAAACTGGAAAAGAAAATAGAGAAAAGTGACAGTGAATTCACGACTGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCAAATGGTGCCCTCTCTAGTTTTTTGTTTGGAGAGGGAGAAAGGCCTCAATGGGTTCAGAGAATTGAAGTGGCTCTTGGAGTAGCAAGAGGCTTGCTATACTTGCACGAAGAGCGCAACACCCAAATCATACATTGTGACATAAAGCCAGAAAATGTGTTACTTGACGCCAATTACACAGCAAAGATTTCAGATTTTGGACTGTCGAAGCTTTTGAAAAAAGATCAAACTAGAACAGTTACTAAGTTAAGAGGGACAATGGGATACATGGCACCTGAATGGCTAAAGAGTGCACCAATAACTGCTAAAGTTGATATATACAGCTTTGGAGTTATGTTATTGGAGATTATTTGCTGCAGGAGGCACGTTGAGATTTGTGAGGATGGAAAAGACAGTGAAGATTACGATGTGGTTCTTTCAAATTGGGTTTTAAGGTGTGTGGTGTCGAAGAAACTAGAGCTAGTGGTGAGACATGACACGGAAGTGTTGAATGATTTCAAGAGGTTTGAGGAAATGGCCTTGGTTGGACTTTGGTGTGTTCATCCAAATCCTGCTTTAAGACCTTTGATGAAGCAAGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGTATTCCTCCTTTGGTTCATGAGCAGATCATGGCAGATCATGGCCTGTAG 2349 0.4253 MSLPIFLRSILLLLSFLNGFHAIVQPNTSITAGSNSTWKSTSGDFEFGFLHLPSGLFLVGIWFGRISDITLAWYFSPPVEPNSQIQFTSAGNLVVAYQNGTTAMTIYNSAEGDAATSAYMQDDGNFVIKDSNLVSVWQSFNSPTNTILPGQTLLSTKTLFSKGGGPSNYSLGSFMLQMQEDGNLVLKAYLWADPAYWYTSPITANMTLVFNATTALMYRVDDAGNIFNLTEITPTPVEDYYHRATIDENGNFQQYSYHKRNGTGWRRVWRAVEDPCRVNAICGVYGLCNSPDNESINCECIPGYIPLDDQDVSKGCHPPVVINYCAENNFKLQVFDDTDFYFDTHLVSLAGVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNSSSSKGLKALLKVANRIDSGTSEIAKKKSFNVRVFLKVLVAVTASLAGFFGALAVYYHPFTRRLTRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGKVYRGALVIGDAQIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLVRLLGFCIESSHRILVYELMPNGALSSFLFGEGERPQWVQRIEVALGVARGLLYLHEERNTQIIHCDIKPENVLLDANYTAKISDFGLSKLLKKDQTRTVTKLRGTMGYMAPEWLKSAPITAKVDIYSFGVMLLEIICCRRHVEICEDGKDSEDYDVVLSNWVLRCVVSKKLELVVRHDTEVLNDFKRFEEMALVGLWCVHPNPALRPLMKQVMQMLDGTVEVGIPPLVHEQIMADHGL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02249 782 PIRSF SRK 1 780 IPR024171 GO:0004674
Vimu7g02249 782 Pfam Protein kinase domain 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02249 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vimu7g02249 782 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Vimu7g02249 782 Gene3D - 16 142 IPR036426 -
Vimu7g02249 782 CDD STKc_IRAK 490 762 - -
Vimu7g02249 782 Pfam S-locus glycoprotein domain 238 306 IPR000858 GO:0048544
Vimu7g02249 782 SMART serkin_6 484 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02249 782 Gene3D - 143 282 - -
Vimu7g02249 782 Gene3D Transferase(Phosphotransferase) domain 1 563 766 - -
Vimu7g02249 782 SUPERFAMILY Protein kinase-like (PK-like) 463 760 IPR011009 -
Vimu7g02249 782 SMART blect_4 29 143 IPR001480 -
Vimu7g02249 782 ProSitePatterns Protein kinases ATP-binding region signature. 490 516 IPR017441 GO:0005524
Vimu7g02249 782 ProSiteProfiles Protein kinase domain profile. 484 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02249 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 767 - -
Vimu7g02249 782 FunFam S-receptor-like serine/threonine-protein kinase 453 562 - -
Vimu7g02249 782 Gene3D Phosphorylase Kinase; domain 1 456 562 - -
Vimu7g02249 782 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 770 - -
Vimu7g02249 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 202 IPR036426 -
Vimu7g02249 782 Pfam D-mannose binding lectin 79 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02249 Vimu-Chr7 19642098 19644446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02249 416 765 Receptor kinase-like Gene Family AT5G45780 37.465 9.92e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu7g02249 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02249 - - gmx:102662509 1207.59