Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02248 ATGGCTATCCAATTTCTTCTCTTTGTTGCCTTCCTTCTATGTTCCTTTGCTTCTGGGAATGATGTTAACTCAATCCAACTGGGGTCCACCATCTTGGCTGGCACCAATTCATCTTGGCGATCATCCTCTGGGGATTATGCCTTTGGATTCTATCACCTCACCAGTGGCCGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAATAAAACATTGGTTTGGTCTGCAAACCGTGACAACCCAGTTGAAATTGGATCATACATCAATCTCACACGAAGTGGCCAATTTGTGCTCCAACCTCTCAACGGGGAATCATTTCCCATCTACGATGGAACAAACACAACATCAGCAGTGATGCAGAATGACGGGAATTTCATCTTGAAGAATGCACTTTCCAACGTTATATGGCAGAGCTTTGATTCACCCACAGATACTCTTCTATTAGGCCAAACTTTGAATTCCAGTCGAAAGCTCTACTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATACAGTTTGGAGATTCAGCAATCTGATGGCAACATTCTTATTAAAGCTTACCGGTTCACGGATTCTGCCTACTGGTGGAGTGGCACTGCCCAAAACACAGGTGTGAGAATTATTTTTAATAGCACAACAGCTTTTCTTTACGCGGTCAATGCCACCAATCAAATTATATATGACATGACTACCGAGGTACAGGGTGCAATCGAAGATTACTATCACCGTGTGTTGTTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCACAAAGAAAATGGAGGTGAGTGGAGATCTGTCTGGCAGGCAGTAAAGGAGCCTTGCACTGTGACTGCTCTTTGTGGGGTGTATGGCTTCTGCAATACAACTGATTCTGAAACCCATTCATACAGTTGTGGATGCTTACCTGGCTATACTCCTTTGGATCCAACAGCACCTTCCAAGGGCTGCTATCTCAGTGAGGTCAAGGACTTGTGTCCTGCAAATTCTTCTGGCTCAAACTTTATGGTGGAAGCTAAAGAGATCCAAGATGCTGATATACCAAACGAGGACTACGTTTCTCTTGATCTAGTAGTCTTGAATAACATGGATGTGGATGGATGCAAGAAAGAATTTTTGGATGATTGTCTCTGCATGGTTGCAGTTTCAAAGGGCAGTGATTGCTATAAGAAAAAATGGCCAATTATAAATGCCGTAAGAACCATCCCTAAAACTAATAATAGTGTGATACTGGTTAAAGTTCCTCTGGTTGCCAATGATAAGGAATCATCATCTTTGGTTATTTTGATAGTGGCTCTCATCTCTTGTTCACTACTTGCTGCATTGTTTGTAGCTACTACCATATATCATCACCCCGTTTGTCTGTATATCCTACATAAACAGGCACCACCAAAGCCCAAGCCAAAGCCGATGGATATCAATCTGAAGGCATTTTCATTCCAACAGCTGAGAGAAGCAACAAACGGATTCAAAGACAAACTTGGTCGAGGAGCCTATGGTACAGTGTATGATGGAATTTTAAACTTGGAAGATCAACAGGTTCATGTTGCTGTCAAAAAACTGGAGCAAGTAGAAGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCACTCATCACAGAAATCTTGTTCGTTTACTGGGCTTTTGCAATGAACAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAAAGGAACACTATCCAACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGTTTGTTATATCTGCATGAAGAGTGTGACAATCAAATCATCCACTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATAAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATCATATTTTGCAGAAAACACATCGAGTTGCATCAAATTGAGGATGAAACAATGGGTGATGACTTGATACTAATAGATTGGGCTATGTATCTGGCAAAAGAAAAAAATTTAAGAGCACCAGTTATTCATCATCTTGAAGTTGAAAGTGATATCAAGAGGTTTGAAAGAATGGCAATGGTTGGATTATGTTGTGTAAACCCCAATCCAACTCTTCGACCATCTATGAAAATTGTGGTACAGATGTTGGAAGGAAATGTCGAAGTGGGAATCCCAACAATCGACTCATAG 2343 0.4102 MAIQFLLFVAFLLCSFASGNDVNSIQLGSTILAGTNSSWRSSSGDYAFGFYHLTSGRYLVGIWFDKIPNKTLVWSANRDNPVEIGSYINLTRSGQFVLQPLNGESFPIYDGTNTTSAVMQNDGNFILKNALSNVIWQSFDSPTDTLLLGQTLNSSRKLYSNANGSVDYSTGQYSLEIQQSDGNILIKAYRFTDSAYWWSGTAQNTGVRIIFNSTTAFLYAVNATNQIIYDMTTEVQGAIEDYYHRVLLDDKGNFQKLIYHKENGGEWRSVWQAVKEPCTVTALCGVYGFCNTTDSETHSYSCGCLPGYTPLDPTAPSKGCYLSEVKDLCPANSSGSNFMVEAKEIQDADIPNEDYVSLDLVVLNNMDVDGCKKEFLDDCLCMVAVSKGSDCYKKKWPIINAVRTIPKTNNSVILVKVPLVANDKESSSLVILIVALISCSLLAALFVATTIYHHPVCLYILHKQAPPKPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYDGILNLEDQQVHVAVKKLEQVEDQGDKEFVTEVQVIALTHHRNLVRLLGFCNEQSHRLLVYEKMEKGTLSNFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDNQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLIKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHIELHQIEDETMGDDLILIDWAMYLAKEKNLRAPVIHHLEVESDIKRFERMAMVGLCCVNPNPTLRPSMKIVVQMLEGNVEVGIPTIDS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02248 780 CDD STKc_IRAK 497 769 - -
Vimu7g02248 780 SMART blect_4 30 142 IPR001480 -
Vimu7g02248 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 774 - -
Vimu7g02248 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 201 IPR036426 -
Vimu7g02248 780 Pfam Protein kinase domain 494 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02248 780 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Vimu7g02248 780 Pfam D-mannose binding lectin 71 157 IPR001480 -
Vimu7g02248 780 ProSiteProfiles Protein kinase domain profile. 491 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02248 780 PIRSF SRK 1 780 IPR024171 GO:0004674
Vimu7g02248 780 Gene3D - 22 140 IPR036426 -
Vimu7g02248 780 FunFam S-receptor-like serine/threonine-protein kinase 462 569 - -
Vimu7g02248 780 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 775 - -
Vimu7g02248 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Vimu7g02248 780 Gene3D Phosphorylase Kinase; domain 1 466 568 - -
Vimu7g02248 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 140 - -
Vimu7g02248 780 SUPERFAMILY Protein kinase-like (PK-like) 470 768 IPR011009 -
Vimu7g02248 780 Pfam S-locus glycoprotein domain 239 310 IPR000858 GO:0048544
Vimu7g02248 780 Gene3D - 142 283 - -
Vimu7g02248 780 ProSitePatterns Protein kinases ATP-binding region signature. 497 523 IPR017441 GO:0005524
Vimu7g02248 780 ProSiteProfiles EGF-like domain profile. 274 314 IPR000742 -
Vimu7g02248 780 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Vimu7g02248 780 SMART serkin_6 491 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02248 780 CDD B_lectin 41 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02248 Vimu-Chr7 19638383 19640923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02248 459 778 Receptor kinase-like Gene Family AT1G53430 40.615 2.16e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu7g02248 Pkinase 9.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02248 - - pvu:PHAVU_002G046100g 1332.39