Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02245 ATGGCCATCCAATTTCTTCTCTTTCTTGCCTTCCTTCTATGTTCCTTTGCTTCTGGGATTGATGCTAACTCAATCCAACTGGGGTCCACCATCTTGGCTGGCACCAATTCATCTTGGCGATCATCCTCTGGGGATTATGCCTTTGGATTCTATCACCTCACCAGTGGCCGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAATAAAACATTGGTTTGGTCTGCAAACCGCGACAACCCAGTTGAAATTGGATCATACATCAATCTCACACGAAGTGGGCAGTTTGTGCTCCAACCTCTCAACGGGGCTTCATTTCCCATTTACGAAGGAACAAACACAGCATCAGCAGTGATGCAGAATGACGGAAATTTCGTTTTGAAGAATGCACTATCCAACGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATGCCAGTCGAAATCTCTACTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATACAGTTTGGAGATTCAGCAATCTGATGGCAACATTCTTCTTAAAGCTTATCGGTTCACGGATTCTGCTTACTGGTGGAGTGACACTGTCCAAAACACAGGTGTGAGAATTATTTTCGACAACACAACAGCTTTTCTTTACGCTGTCAATGCCACCTACCAAATTATATTTAACATGACCACCGAGGTAGAGGATGCAATCGAAGATTACTATCACCGTGTGGTGGTGGATGACAAGGGAAACTTTCAGAAGTGGACTTACCTTAAAGAGAATGGAAGTGAGTGGAGATCTGTGTGGAAGGCAGTAACAGAGACTTGCACTGTGACTGCCCTTTGTGGGGTGTATGGCTTTTGCAATACAACTGATTCCGACAACCATACATACACCTGTGGATGCTTACCTGGTTATACTCCTTTGGATCCAACAGCACCCTCCAAGGGGTGCTATCTCAGTGAGGTTAAGGACTTGTGTCCTGCAAATTCTTCTGGCTCTAACTTTATGGTGGAAGTGAAAGAGATTCAACATGCTGATATACCAAACCATGGCTATGTTTTTTTTGATCTACAAGTCTTGAGTGGCGTGGATCAGGAAACATGCAAGAAAGAATTGTTGGATGATTGTCTCTGCATGGTTGCCGTTTCACTTGGCAATAATTGCTATAAGAAAAAATGGCCAATTGTAAATGCCGCAAGAATCTTCCCTAAAACTAGTAATAGTGTGATGCTGGTTAAAGTTCCTCTGGTTGCCAATGATAAGGAGTCATCGTCTTTGGCTGTTTTGATAGTGGCTCTCGTCTCTTGTTCACTGCTTGCTGCATTGTTTATAGCTACTGCCATTTATCATCACCCGGTTTGTCAGCATCTTATGCACAAACAAGCACCACCGAAGCCAAAGACAAAGCCTATGGATATCAATCTAAAGGTATTTTCATTCCAACAGCTGAGAGAAGCAACAAATGGATTCAAAGACAAACTTGGTCGAGGAGCTTATGGTACAGTGTATGGCGGGATTTTAAACTTGGAAGGTGAACAGGTTCAGGTTGCTGTCAAAAAACTGGAGCAAGTAGAAGACCAAGGTGATAAAGAATTTGAGACAGAAGTTCAAGTTATTGCTCTTACTCATCACAGAAATCTTGTTGGGCTATTGGGCTTTTGCAATGAGCATAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAAAGGAACACTATCCAACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGTTTGTTATATCTGCATGAAGAGTGTGACAATCAAATCATCCACTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATAAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATCATATTTTGCAGAAAACACATCGAGTTGCATCAAAAAGAGGATGAAACAATGGGTGATGACTTGATACTAATAGATTGGGTTATGTATCTGGCAAAAGAAAACAATTTAAGAGCACCAGTTGTTCATCATCTTGAAGTTGAAAGTGATATCAAGAGGTTTGAAAGAATGGCAATGGTTGGATTATGTTGTGTAAACCCCAATCCAACTCTTCGACCATATATGAAAATTGTGGTACAGATGTTGGAAGGAAATGTCGAAATGGGAGTCCCAACAATAGACTCATAG 2343 0.4153 MAIQFLLFLAFLLCSFASGIDANSIQLGSTILAGTNSSWRSSSGDYAFGFYHLTSGRYLVGIWFDKIPNKTLVWSANRDNPVEIGSYINLTRSGQFVLQPLNGASFPIYEGTNTASAVMQNDGNFVLKNALSNVIWQSFDSPTDTLLLGQTLNASRNLYSNANGSVDYSTGQYSLEIQQSDGNILLKAYRFTDSAYWWSDTVQNTGVRIIFDNTTAFLYAVNATYQIIFNMTTEVEDAIEDYYHRVVVDDKGNFQKWTYLKENGSEWRSVWKAVTETCTVTALCGVYGFCNTTDSDNHTYTCGCLPGYTPLDPTAPSKGCYLSEVKDLCPANSSGSNFMVEVKEIQHADIPNHGYVFFDLQVLSGVDQETCKKELLDDCLCMVAVSLGNNCYKKKWPIVNAARIFPKTSNSVMLVKVPLVANDKESSSLAVLIVALVSCSLLAALFIATAIYHHPVCQHLMHKQAPPKPKTKPMDINLKVFSFQQLREATNGFKDKLGRGAYGTVYGGILNLEGEQVQVAVKKLEQVEDQGDKEFETEVQVIALTHHRNLVGLLGFCNEHSHRLLVYEKMEKGTLSNFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDNQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLIKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHIELHQKEDETMGDDLILIDWVMYLAKENNLRAPVVHHLEVESDIKRFERMAMVGLCCVNPNPTLRPYMKIVVQMLEGNVEMGVPTIDS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02245 780 Pfam D-mannose binding lectin 71 157 IPR001480 -
Vimu7g02245 780 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Vimu7g02245 780 CDD STKc_IRAK 497 769 - -
Vimu7g02245 780 Pfam S-locus glycoprotein domain 240 310 IPR000858 GO:0048544
Vimu7g02245 780 Gene3D Transferase(Phosphotransferase) domain 1 570 774 - -
Vimu7g02245 780 ProSiteProfiles Protein kinase domain profile. 491 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02245 780 SUPERFAMILY Protein kinase-like (PK-like) 470 768 IPR011009 -
Vimu7g02245 780 SMART serkin_6 491 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02245 780 PIRSF SRK 1 780 IPR024171 GO:0004674
Vimu7g02245 780 Gene3D - 143 283 - -
Vimu7g02245 780 Gene3D - 21 140 IPR036426 -
Vimu7g02245 780 Pfam Protein kinase domain 494 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02245 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Vimu7g02245 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 775 - -
Vimu7g02245 780 SMART blect_4 30 142 IPR001480 -
Vimu7g02245 780 FunFam S-receptor-like serine/threonine-protein kinase 461 569 - -
Vimu7g02245 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 140 - -
Vimu7g02245 780 Gene3D Phosphorylase Kinase; domain 1 465 568 - -
Vimu7g02245 780 ProSitePatterns Protein kinases ATP-binding region signature. 497 523 IPR017441 GO:0005524
Vimu7g02245 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 201 IPR036426 -
Vimu7g02245 780 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 773 - -
Vimu7g02245 780 CDD B_lectin 41 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02245 Vimu-Chr7 19631597 19633939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02245 397 778 Receptor kinase-like Gene Family AT1G53430 36.434 6.38e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu7g02245 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02245 - - pvu:PHAVU_002G046100g 1300.8