Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02239 ATGGAAGCAATTGAAAATCACATGCCACAAGTTATGGTAATTGATGAAATTGGTACAAAACATGAAGCAATGGCGACAAGCACAATTGTACAAAGTGGGATTCAGCTTATTTGTAAAATTGTAAGAACAAATTGGGGGAATATGACTATGGAGTATAGTATGGGGGACAAGAAGATATGTATAAAAGGTAATCCAAATATGCCGCGACAGCTGGTGAAACCGAGGAGCTTGCCGAAGTTAATGGAAGCTGAGTCATGGGCAACAGGTTGGAATTTGAGCCTAGTGGAGGCAGGGGACAGCGCGAGAATGCGAAGCAGAGACTCGGCAAAGCAGAAACGTGAACGCAATGTTATGGACAGCGAGAATGCGAAGCAGAGACTCCGAAACCCAAAACAAAAAGAAAGCCAAACTTTGAATAGCAGTCGGAAGCTCTATTCCAATGCCAATGGATCAGTTGATTATTCAACTGGACAATACAGTTTGGAGATCCAACAATCTGATGGCAACATTGTTCTCAAAGCTTATCGGTTCACGGATTCTGCCTACTGGTGGAGTGACACTGCCCAGAACACAGGTGTGAGAATTATTTTCGACAACGCAACAGCTTTTCTTTACGCGGTCAATGCAACCAACCAAATTATATTTAACATGACTACTGAAGTAGTGGGTGCAATCGAAGATTACTACCATCGTGTGTTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCACAAAGAGAATGGAAGTGAGTGGAGATCTGTGTGGCAGGCCGTAACAAAGCCTTGCACTGTGACTGCCCTTTGTGGGGTGTATGGTTTTTGCAACACATCTGGTTCTGACACCCAAACATACAGTTGTGGTTGCTTGCCGGGCTATACTCCTTTGGATCCAACAGCACCTTCCAAGGGGTGCTATCTCAGTGAGGTCAAGGACTTGTGTGCTGCAAATTCTTCTGCCTCAAACTTTGAGGTGGAAGTGAAAGAGATTCAAGATGCTGATATACCAAATTCCGGTTACTTTTTTCTTGATCTGCAAGTCTTGGATAGGATGGATTTGGAAAGCTGCAAGAGGGAACTGATGGATGATTGTCTATGTATGGCTGCTGTTTTAGATGGCACTGCTTGCCATAAGAAAAAGTGGCCAATTATAAATGCCATAAGAATCATCCCTGACACTAGTAATCGTGTGATGCTAATTAAAGTTCCTCTGCTTGACAACAACAAGGACAACGAAAGGGATTCACCGTCTGTGGTTGTTTTGGTAGTGGCTCTCATTTCTTGCTCCCTACTTGCTGTCCTGTTTGCAGCCACTGCCATTTATCATCACCCCGTTTTCATAATGTCTTTAACTATATTTTTGCCTTGCATTGCTGCACTTCTTTCACTTTCAAATCTGAATGGCTTACATGCCATACAATCAAATACAAGCATCACTGCTGGATCCAATTCTACCTGGAAATCTTCCTCCAGTGATTTTGAATTTGGATTCTACCATCTTCCCAATGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCCCTGAGAGAACGCTGGTATGGTACCTGGCTCCTCCTGTGGAACCGAATTCCCAAATCCAATTCACTTCTGCAGGACAGCTTGTTGTAGTACACCCAAACGGGACTACTGCTCAGACCATATACAGCGGAGGAAACGGCGGGGCGGCAACATCTGCCACCATGCAAGACGATGGCAATTTTGTGATGAAGAACTCCAACTTAAGACCTGTGTGGGAGAGTTTCAACTTTCCAGCCGACACAATCTTGCCAGGCCAAACCTTGCAGACTAATCATAGCCTCTATTCCAAGGGGAGAGGACCTTCAAACTACTCATTGGGAAATTTCATGCTACAAATGCAAGGTGATGGCAACTTGTTGCTCAAAGCTCACCAATGGGCTGACCCTGCATACTGGTTCACTTCGACTACGACCCCAGATGTAAATCTGCTGTTTAATGCTACCACTGCTCTCATGTACCTTGTCGGCGGCGGCACCGGGAACATCTACTCTATAACCAACACCACTCCAACCCCGGTGGAGGATTATTATCATCGTGCTGCAATAGATGAAAATGGGAATTTCCAGCAATATGCATATCGCAAAAGGAACGGGAGCGGATGGAGCAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGTTGTCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTCAGTGTCTTCCAGGTTATATCCCGTTGGATGATCAAGATGTTTCAAAAGGGTGTCGCCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCCATTTCGATACTCATCTTGTTAGGTTGGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAATATCGGTGCTGCAACTTATAGCCAATCCACCTCCACATGTGTCAAGAAGAGATTGCCCTTGCTGAATGCTAGAAATAGCACTTCTTCGAAGGGACTGAAAGCGCTGCTTAAAGTTGCTGAAAGGGATGAGTCTGGGACACCTGAAGTTTCCAAGAAGAAAAGTTTTAATGTAAGAGTCCTTTTGAAGGCTCTTCTTGCTGTTACTGCCACTCTTGCCTGTTTCTTGGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGAAGACTAAGAAGAAAAAAGAAGCATCTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTCACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTCACTAGGATTCTTGGAAGGGGAGCTTCAGGCAAAGTCTATCGTGGTGCTTTAATAATAGACGGTGCAGAGATTGGTATTGCAGTAAAGAAACTCGAAAAGAAAATAGAGAAAAGTGAAAGAGAATTCATGACTGAGCTCAAAATTATTGGTCGTACGCATCACAGAAATTTGGTGAGGCTTTTGGGTTTTTGCATTGATAGTAGCCATCGAATTATAGTATATGAGCAACTAGAGGTAGTGGTGAGACATGACACAGAAGTGCTGAATGATTTCAAGAAGTTTGAGGAAATGGCCTTGGTTGGACTATGGTGCGTTCATCCAAATCCAGCTTTGAGGCCTTCGATGAAGCAAGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTACGATATGATGATGGCAGATCAGGGCTTATAG 3243 0.4419 MEAIENHMPQVMVIDEIGTKHEAMATSTIVQSGIQLICKIVRTNWGNMTMEYSMGDKKICIKGNPNMPRQLVKPRSLPKLMEAESWATGWNLSLVEAGDSARMRSRDSAKQKRERNVMDSENAKQRLRNPKQKESQTLNSSRKLYSNANGSVDYSTGQYSLEIQQSDGNIVLKAYRFTDSAYWWSDTAQNTGVRIIFDNATAFLYAVNATNQIIFNMTTEVVGAIEDYYHRVLVDDKGNFQKLIYHKENGSEWRSVWQAVTKPCTVTALCGVYGFCNTSGSDTQTYSCGCLPGYTPLDPTAPSKGCYLSEVKDLCAANSSASNFEVEVKEIQDADIPNSGYFFLDLQVLDRMDLESCKRELMDDCLCMAAVLDGTACHKKKWPIINAIRIIPDTSNRVMLIKVPLLDNNKDNERDSPSVVVLVVALISCSLLAVLFAATAIYHHPVFIMSLTIFLPCIAALLSLSNLNGLHAIQSNTSITAGSNSTWKSSSSDFEFGFYHLPNGLFLVGIWFGRIPERTLVWYLAPPVEPNSQIQFTSAGQLVVVHPNGTTAQTIYSGGNGGAATSATMQDDGNFVMKNSNLRPVWESFNFPADTILPGQTLQTNHSLYSKGRGPSNYSLGNFMLQMQGDGNLLLKAHQWADPAYWFTSTTTPDVNLLFNATTALMYLVGGGTGNIYSITNTTPTPVEDYYHRAAIDENGNFQQYAYRKRNGSGWSRVWRAVEDPCRVNVVCGVYGLCTSPDNESVKCQCLPGYIPLDDQDVSKGCRPPAVINYCAENNFKLQVFDDTDFHFDTHLVRLAGVDFESCKKDVIDDCNIGAATYSQSTSTCVKKRLPLLNARNSTSSKGLKALLKVAERDESGTPEVSKKKSFNVRVLLKALLAVTATLACFLGALAVYYHPFTRRLRRKKKHLNATAIGINFREFTFQELHEATDGFTRILGRGASGKVYRGALIIDGAEIGIAVKKLEKKIEKSEREFMTELKIIGRTHHRNLVRLLGFCIDSSHRIIVYEQLEVVVRHDTEVLNDFKKFEEMALVGLWCVHPNPALRPSMKQVMQMLDGTVEVGVPPLVYDMMMADQGL 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02239 1080 MobiDBLite consensus disorder prediction 101 142 - -
Vimu7g02239 1080 Pfam Protein tyrosine and serine/threonine kinase 937 1013 IPR001245 GO:0004672|GO:0006468
Vimu7g02239 1080 FunFam S-receptor-like serine/threonine-protein kinase 903 1012 - -
Vimu7g02239 1080 MobiDBLite consensus disorder prediction 101 131 - -
Vimu7g02239 1080 Coils Coil 964 984 - -
Vimu7g02239 1080 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1012 1068 - -
Vimu7g02239 1080 Pfam D-mannose binding lectin 527 607 IPR001480 -
Vimu7g02239 1080 Gene3D - 470 591 IPR036426 -
Vimu7g02239 1080 ProSiteProfiles Bulb-type lectin domain profile. 470 590 IPR001480 -
Vimu7g02239 1080 ProSiteProfiles Protein kinase domain profile. 934 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02239 1080 SUPERFAMILY Protein kinase-like (PK-like) 921 1013 IPR011009 -
Vimu7g02239 1080 SUPERFAMILY alpha-D-mannose-specific plant lectins 506 650 IPR036426 -
Vimu7g02239 1080 SMART blect_4 478 592 IPR001480 -
Vimu7g02239 1080 SMART egf_5 263 307 IPR000742 -
Vimu7g02239 1080 SMART egf_5 725 767 IPR000742 -
Vimu7g02239 1080 ProSitePatterns Protein kinases ATP-binding region signature. 940 966 IPR017441 GO:0005524
Vimu7g02239 1080 SMART tyrkin_6 934 1058 IPR020635 GO:0004713|GO:0006468
Vimu7g02239 1080 Gene3D - 592 729 - -
Vimu7g02239 1080 Gene3D - 133 269 - -
Vimu7g02239 1080 Gene3D Phosphorylase Kinase; domain 1 907 1012 - -
Vimu7g02239 1080 Pfam S-locus glycoprotein domain 688 756 IPR000858 GO:0048544
Vimu7g02239 1080 Pfam S-locus glycoprotein domain 226 296 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02239 Vimu-Chr7 19590485 19597621 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02239 863 1011 Receptor kinase-like Gene Family AT2G43700 34.899 5.13e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu7g02239 PK_Tyr_Ser-Thr 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02239 - - vum:124841710 905.59