Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02228 ATGCTGGCGAATCATTTCCAGAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCAGATTCCTAATTCTGATGAATCGCAGCTGCTCGACGACGCCGTTGGCCTCATCAAGAAGAACGACGGAGGCGGTGTTGAGAGCCTTGACTATGAAGTTATAGAGAATTTTGCTTACCGTGAGGAGCAGGCGCAGCGAGGGAAGCTGTATGTGAGCTATTTGCTTGTGGTGAAATGGTTCTTCGCCTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTTTCATCAACATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTTTCGGCGACATTTGATATAATTCAGAAGTCATATATAGCTGGATTCGTTGTGTATGTTCTGTTCAACTTGGCTTTGGTGTATTCTTCTGTATATATTATCACTCAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTGAACGGAGTTGATACTCCCGGCATCCTTCTTTTCAGAACTTTAGTTGGAAAGATATTTGGAAGCATTGGTTCGGTGGGTGGAGGCCTTGCCTTGGGTAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATATAAATTCGAGGTGGTTTCAAGTGTTCAGAAGTGACCGGGATCGCCGCGATCTTGTAACCTGTGGATGTGCTGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTGTTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTTCGAGCTGCAATGGGATGGTGCAAGAGTGGAAAATGTGGACATTTTGGGTCCGGTGGATTTATAATATGGGATATATCAGAATATTTGTTTTCTTCCTTCCCCTTCTTGACTGATTTTGGTTTTAGTGGCCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTCAACCAGCTTACTCTTTATATTACCACTTGGCGACGGAATCATCTTCACATGAAAGGGAACAAGGTCAAGATTATTGAAGCATGCCTTGTATCCATTTTAACGTCAGTGATTTCATTTGGCTTGCCACTTCTAAGAAAATGTACTCCTTGCCCTGAATCTGATCCTGCATCTGGTATTGAATGTCCTCGACCACCTGGAATGTATGGGAATTATGTAAATTTTTATTGTAGCAAAGACAACGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCCTTAGCAGTGGTCACGTTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTCGTTGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCGTCTTTTCTTGGAGGCTCAATGCGGATGACAGTGTCTCTATGTGTGATTATGGTTGAAATCTCAAATAACTTGAAATTTTTACCTCTTATAATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTATGAGGAGCAGGCTCAATTGAGGGGCATTCCGTTACTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCCCGTGTTGTTAAGGTTTCAGATGTGGTCTCCATTCTGCGGAGCAATAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGGTTAGTGCTTCGTAGTCATTTATTGGTAATTCTTCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCGGATTCTCGAGGTGGGGCCAGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTATCGAGGATATACATCTAAGTTCAGATGACTTAGAAATGTACATTGATCTTGCTCCATTTTTGAATCCCTCACCATATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGGCAACTTGGTCTAAGGCATTTATTTGTTGTTCCTCGACCATCTCGCGTGCTTGGTTTGATAACGAGAAAAGATTTGTTGATTGAGGACAATAAAAATGTGAATACGTTAGAGCTTCAGTCAACTAGTGTAAGGATAGGACATCAGTATAAAAGATTGACGACAAGGAATACAGAGGTGGAGCGCCCATTGCTAAACGGACTGCTCGAGAATCAGATACCTGACTAA 2451 0.4215 MLANHFQNGIETARLVWSQIPNSDESQLLDDAVGLIKKNDGGGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVFINIAVENFAGWKFSATFDIIQKSYIAGFVVYVLFNLALVYSSVYIITQFAPAAAGSGIPEIKGYLNGVDTPGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISEYLFSSFPFLTDFGFSGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHMKGNKVKIIEACLVSILTSVISFGLPLLRKCTPCPESDPASGIECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDSRGGARSIRHDSGEFAKPVSSKGICIEDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDNKNVNTLELQSTSVRIGHQYKRLTTRNTEVERPLLNGLLENQIPD 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02228 816 Gene3D Clc chloride channel 69 590 - -
Vimu7g02228 816 FunFam Chloride channel ClC3 68 400 - -
Vimu7g02228 816 SUPERFAMILY CBS-domain pair 594 768 IPR046342 -
Vimu7g02228 816 FunFam Chloride channel protein 713 804 - -
Vimu7g02228 816 CDD ClC_6_like 45 589 - -
Vimu7g02228 816 ProSiteProfiles CBS domain profile. 721 778 IPR000644 -
Vimu7g02228 816 Pfam CBS domain 722 768 IPR000644 -
Vimu7g02228 816 Pfam CBS domain 618 661 IPR000644 -
Vimu7g02228 816 CDD CBS_pair_voltage-gated_CLC_euk_bac 611 768 - -
Vimu7g02228 816 Pfam Voltage gated chloride channel 134 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 SUPERFAMILY Clc chloride channel 54 591 IPR014743 -
Vimu7g02228 816 Gene3D - 610 774 IPR046342 -
Vimu7g02228 816 SMART cbs_1 724 772 IPR000644 -
Vimu7g02228 816 SMART cbs_1 610 662 IPR000644 -
Vimu7g02228 816 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g02228 816 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g02228 816 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g02228 816 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g02228 816 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 576 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g02228 816 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02228 Vimu-Chr7 19517907 19527233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02228 1 786 Ion Channels AT5G26240 81.321 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02228 K05016 - gmx:100811908 1493.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02228 7 19517907 19527233 Vimu7g02228 7 19517907 19527233 ECH