Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02224 ATGGCCGTGGGCATAGTTGGACAGGAGTGGAGGCAATTTCGGAATTACCCCTCCGATCTGGCACTCACTGGCGTGTTCAAATCCCGAATTCCATTTGGAACACTCTTTTTTTTCGCTTCTTCTGCCTCTTCTTCTCTTGCGCTAATCGTTTCTCAACGCTTTGGGTTGCGTCTCCCAGAGACAGAGGGACCTTCTCCTCCTTCTTCTTCTTCTCCTTCTTCTCTCGTCCATGGACCTTCACAACCGACCAGATCACTGAAGTTGGAGGAGGATTTCGAAGACGACCGACAGATCTCCGCCCCTCCCACCGGCCACGCGAGAGACGCCCTCCTCTCCGACGTCAAGGAACAGGTCATCGTTCTTGATTCAACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGGTACATCTATTTGTCATCTTGCTTCATTCGTTTTTGTTTTATTCTTTCGCAGAATTCGGTTCTTTGCTGGTTTCCTCCGTTGTTGCGCTTCATTCGGGCTTGTTTTTTTTGCAGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCAATTCCTGCTTTGGTTAAACATCTTCAAGCGCCTCCTCTGGCTGGAAGCGACCGGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTCGAGAAGGGAAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAGCAGCTCATCGTCGACAGCGGTGCTTTGAAACATCTCGTTGATCTTTTAAAGAGACATGAAAATGGCTTAACATCTCGTGCCATTAATAGTCTAATTCGTAGGGCTGCAGACGCGATTACTAATCTTGCGCACGAGAACAGCAGTATTAAGACTCGTGTCAGGATGGAAGGTGGGATTCCACCGCTCGTTCATTTACTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTTGCTTTCAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTCCTAACATAAAGAAAGAAGTTATTCTTGCTGGAGCCCTACAACCGGTCATCGGATTACTTAGGTATATTCTTACTTTACCCCATGGAAAACTGCTATGCACCCAGAGGGAAGCAGCCTTGTTACTCGGACAGTTTGCAGCAACTGATTCAGACAGCAAGGTTCTTTCCCAATTTGTAGCATTCGTGATTCTTATCTTGTGGGTTAGGTCACAAATGGCGAATCACCATCTTGTTTATCTTATGGAGTTTGAGTGGTGCAAGGCCAGCCTCCCTCGGGTTTTCATCAGAAACTCACCTCAAAAGCTAGCTATTAAGGAGGGTAACCAAACACTTAAATACTTGATTATGCATCCCATACTGACTTCGACACCTCCTAATATGCAAGTTCACATTGTTCAGAGGGGTGCTGTCGGACCTCTGATAGACATGCTTCAGTCTCCTGATGTTCAGCTAAAAGAAATGTCTGCTTTTGCATTGGGGAGACTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTACGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTAAAAAGATTAGAAGAAAAGATTCATGGGCGAGTGTTGAACCATTTGTTATATCTCATGCGAGTCTCAGAGAAGGCTTTTCAAAGAAGAGTTGCTTTGGCTCTTGCTCACCTTTGTTCTGCAGATGACCAGAGAAAAATATTTATTGATCACCATGGTTTGGAATTGCTTATGGGGCTTCTTGGCTCGTATTATAATCCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCACGACTCTGTCTCCTGTGGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTCTAGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTGCTTGCATCTTCAGACGCATTTCGTGCTATGTTTGATGGAGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATACACGGGATCAGTTGAGATCACGCTTGACATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGTGAGTACACGATTGCGCAGGATATATCACTTGAGAGCGTATCAAGTATGTATGAACTTTCTGAAGCATTTAATGCTATATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAACACTTTGATAAATTGAGTGTAAAGCCAGGAAGTTGTGGTGAGTTTAAAGAATCCCCTCAACTCACTCCCAACGGTGTACTTTCAATTGGAATGGGCCAATCGGCTGAACTCAAGTCTTTTTATGCTCGTTTCATGATTAGAGTAGACTGCAAGTCATTCTTTGACACGCGGAGTGCACAGGATGGAGTAACTGTTGATCATTGCATCATGCATGCTTGGTGGATACAGCGTATCTCATTTGGCATTTCCTCCAAAGGATTGAATTTTTGTAGTGAAATTGAGTTGTAG 2853 0.4522 MAVGIVGQEWRQFRNYPSDLALTGVFKSRIPFGTLFFFASSASSSLALIVSQRFGLRLPETEGPSPPSSSSPSSLVHGPSQPTRSLKLEEDFEDDRQISAPPTGHARDALLSDVKEQVIVLDSTFSWKESDRAAAKRATHALADLAKNGTSICHLASFVFVLFFRRIRFFAGFLRCCASFGLVFFAEEVVNVIVEGGAIPALVKHLQAPPLAGSDRLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHENGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLRYILTLPHGKLLCTQREAALLLGQFAATDSDSKVLSQFVAFVILILWVRSQMANHHLVYLMEFEWCKASLPRVFIRNSPQKLAIKEGNQTLKYLIMHPILTSTPPNMQVHIVQRGAVGPLIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHHGLELLMGLLGSYYNPKQQLDGAVALCKLANKATTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSVKPGSCGEFKESPQLTPNGVLSIGMGQSAELKSFYARFMIRVDCKSFFDTRSAQDGVTVDHCIMHAWWIQRISFGISSKGLNFCSEIEL 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02224 950 ProSiteProfiles BTB domain profile. 728 795 IPR000210 GO:0005515
Vimu7g02224 950 SMART BTB_4 728 825 IPR000210 GO:0005515
Vimu7g02224 950 FunFam Armadillo/beta-catenin repeat family protein 719 863 - -
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 302 337 IPR000225 GO:0005515
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 253 IPR000225 GO:0005515
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 252 302 IPR000225 GO:0005515
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Vimu7g02224 950 Pfam BTB/POZ domain 721 823 IPR000210 GO:0005515
Vimu7g02224 950 SUPERFAMILY ARM repeat 188 598 IPR016024 -
Vimu7g02224 950 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 495 866 IPR044282 -
Vimu7g02224 950 SUPERFAMILY POZ domain 720 822 IPR011333 -
Vimu7g02224 950 SUPERFAMILY ARM repeat 625 697 IPR016024 -
Vimu7g02224 950 CDD BTB_POZ_ARIA_plant 715 830 - -
Vimu7g02224 950 Gene3D - 120 464 IPR011989 -
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 552 IPR000225 GO:0005515
Vimu7g02224 950 Gene3D Potassium Channel Kv1.1; Chain A 709 857 IPR011333 -
Vimu7g02224 950 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 344 386 IPR000225 GO:0005515
Vimu7g02224 950 MobiDBLite consensus disorder prediction 63 81 - -
Vimu7g02224 950 MobiDBLite consensus disorder prediction 59 82 - -
Vimu7g02224 950 Gene3D - 484 705 IPR011989 -
Vimu7g02224 950 SMART arm_5 186 240 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 241 289 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 498 539 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 333 373 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 540 580 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 655 696 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 375 422 IPR000225 GO:0005515
Vimu7g02224 950 SMART arm_5 291 331 IPR000225 GO:0005515
Vimu7g02224 950 Pfam Armadillo/beta-catenin-like repeat 298 330 IPR000225 GO:0005515
Vimu7g02224 950 Pfam Armadillo/beta-catenin-like repeat 333 372 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02224 Vimu-Chr7 19487457 19495967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02224 503 675 U-box Gene Family AT5G40140 28.324 2.69e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu7g02224 BTB 4.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02224 - - gmx:100812456 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02224 7 19487457 19495967 Vimu7g02224 7 19487457 19495967 ECH
Vimu7g02224 7 19487457 19495967 Vimu3g03239 3 46113805 46123632 PCT