Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02219 ATGGGTACGATGCTACAAACCATTGTGACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCATCATCTTCGTCTTCTTTCTGTTCAAACCATGGCGCTTCTTTTTCTCTCAGCGTTTCCTTTCTTCTATAAAGGGCGAGCTGGAGCGCCCCCTTGTTACCGACGAAGAGGATGCAAATGCGTCGCCGTTGAATCAGATCAATGAATTGCCTCGAGATTATGATCTCGAGGGTGCATGTTATCCCACTGAAGCTCATTTTCGCTCTCCTCGGACCCATGGCCAAGGGCTTGTTCATAAGCAAAGGGTTCAAAACCTTTCTGTTCCACCTACTATACACCTGGCTGGTGATGCTTTGGTCGTGGATGTGATCTCTGATCCTTCCTCTGACGATGTTGATCTTGGTCAAACGCTTAGGCTTTCCACAGCTCAATTAGCACAGTTTCAAAAGCAGGGAACTCCTAATTTTCGAAATGATAGACTACAGGACTTAGTGCAATGGAATATCTCCGATCAAAGAAGTTGTCTCACTCTGGAGGTTATCAGTGGCCCTTCTCGAGGACTTCTTTGTTCTGTACAGTCGACCAATTCTTCTCGTCTACCGCTAACCTTGGGAAGAGTGTCTCCGAGTGATTTGTTGATAAAAGATTCAGAAGTGTCAGGAAAGCACGCTATGATAAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGACATGGGTAGTCTGAATGGAACACTATTGAACTCTAAGCCAATCAACCACCCAGACACTGAAAGTAGGAATTGGGGAAATCCAATGAGTCTTGCTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTCCATATTACATCCCAAACTCAGCATCACATTCCCTTTGGAGTTGGCATGGCATCAGATCCAATGGCTATGCGTAGAGGAGGAAAAAGGTTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTGAATCAGTTTGGACTTTTTGGCGTTTGTGATGGTCATGGTGGAGATGGGGCCGCCAAATCTGCTAGCAAACTTTTTCCTGAGGTAATTGCTAGTATATTATCGGATTCATCAAGGAGGGAGAGAGTTTTGTCACTCGGTGATGCTTCAGATATTCTTCGAGATGCATTTTCTCAAACGGAAGCTCATATGAATCACCATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGAAGAAAATTTCTTTGCCCAATGTGCTAATGTGGGGGACTCCACCTGTATTATGAGTTTGAATGGGAAGCAAATCAAGATGACAGAAGATCACAAGATAACGAATTATTCAGAAAGACTCAGAATCGAAGAGACAGGCGAACCCTTAAAAGAAGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATACCCGGTTCAGTTCAGAACCTTACATAAGTGACGTTGTGCACATTGATCAAGCAAGCAAAGCTTTTGCTATTCTAGCTAGTGATGGGCTGTGGGATGTCATCAGCGTGAAGAAGGCAATTCAGCTTGTGTTGCAGTTTGTTTTCTCACCTGCACAGATGAAGGAGAAATGCCATTCAGAGAGAGAGAATATAGCAGAAAAAGCTGCAAGCTTGTTGTTGAATGAGGCTAAAACGCTCAGAACAAAGGATAATACGTGTGTAATTTTCTTAGATTTTGATATCTTCAACAAATTCTCTTGTAAAGTTGAATCCTAG 1767 0.4312 MGTMLQTIVTVLLLLMLLLIIIFVFFLFKPWRFFFSQRFLSSIKGELERPLVTDEEDANASPLNQINELPRDYDLEGACYPTEAHFRSPRTHGQGLVHKQRVQNLSVPPTIHLAGDALVVDVISDPSSDDVDLGQTLRLSTAQLAQFQKQGTPNFRNDRLQDLVQWNISDQRSCLTLEVISGPSRGLLCSVQSTNSSRLPLTLGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTESRNWGNPMSLANGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMAMRRGGKRFPMEDVCYYQWPLPGLNQFGLFGVCDGHGGDGAAKSASKLFPEVIASILSDSSRRERVLSLGDASDILRDAFSQTEAHMNHHYEGCTATVLLVWTDGEENFFAQCANVGDSTCIMSLNGKQIKMTEDHKITNYSERLRIEETGEPLKEGETRLYGINLARMLGDKFLKQQDTRFSSEPYISDVVHIDQASKAFAILASDGLWDVISVKKAIQLVLQFVFSPAQMKEKCHSERENIAEKAASLLLNEAKTLRTKDNTCVIFLDFDIFNKFSCKVES 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02219 588 CDD PP2Cc 305 576 IPR001932 -
Vimu7g02219 588 ProSitePatterns PPM-type phosphatase domain signature. 334 342 IPR000222 GO:0043169
Vimu7g02219 588 SMART PP2C_4 291 574 IPR001932 -
Vimu7g02219 588 SUPERFAMILY PP2C-like 310 577 IPR036457 -
Vimu7g02219 588 FunFam Protein phosphatase 2C 70 170 304 - -
Vimu7g02219 588 SUPERFAMILY SMAD/FHA domain 173 284 IPR008984 GO:0005515
Vimu7g02219 588 CDD FHA_PP2C70-like 175 285 - -
Vimu7g02219 588 Gene3D - 169 304 - -
Vimu7g02219 588 FunFam Protein phosphatase 2C 70 305 583 - -
Vimu7g02219 588 ProSiteProfiles Forkhead-associated (FHA) domain profile. 201 252 IPR000253 GO:0005515
Vimu7g02219 588 Pfam Protein phosphatase 2C 304 569 IPR001932 -
Vimu7g02219 588 Pfam FHA domain 202 277 IPR000253 GO:0005515
Vimu7g02219 588 SMART FHA_2 200 252 IPR000253 GO:0005515
Vimu7g02219 588 ProSiteProfiles PPM-type phosphatase domain profile. 297 576 IPR001932 -
Vimu7g02219 588 Gene3D - 305 583 IPR036457 -
Vimu7g02219 588 PANTHER PROTEIN PHOSPHATASE 2C 285 572 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02219 Vimu-Chr7 19470575 19477235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02219 1 577 PP2C-type Phosphatase Gene Family AT5G19280 56.601 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02219 K01090 - gmx:100170642 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02219 7 19470575 19477235 Vimu7g02219 7 19470575 19477235 ECH