Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02210 ATGATGAAGAAAAAGTGCAGTTCAGGTCGGCAAAGGATTCCGATTGAGAAAATACCAAAAAAGAGTCACTTACAAGTAACATTTTCGAAGCGTCGTTCGGGACTCTTCAAAAAAGCCAGTGAGCTCTGCACACTCTGTGGAGTAGAAATCGCAATCATCGTTTTCTCTCCCGCGGACAAGGCCTTCTCGTTCGGCCACCCGCAAGTTGAATCCGTCATTGATTCTTACGTAACTACAAACTCATCACCAGAGTATAATCGCAGTGGTAATGGTCACCAACTCGTTGAGGCTCATCGCAGTGCTAATATTCGTAATCTCAACGCGCAACTCACTCAGATTGTTAACGAGCTAGAGATGGAGAAAAGGCGAGGAGAAGAGCTAGATCGAGCATGGAAAACGAGACAGAGCCAATTCTGGTGGGAGATCCCCGTTAACGAACTTGGATTGCAAGAGTTACAGCATTTGATGTTT 471 0.4544 MMKKKCSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPQVESVIDSYVTTNSSPEYNRSGNGHQLVEAHRSANIRNLNAQLTQIVNELEMEKRRGEELDRAWKTRQSQFWWEIPVNELGLQELQHLMF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02210 157 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 Coils Coil 100 127 - -
Vimu7g02210 157 SUPERFAMILY SRF-like 9 86 IPR036879 GO:0003677|GO:0046983
Vimu7g02210 157 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 Gene3D - 91 156 - -
Vimu7g02210 157 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vimu7g02210 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vimu7g02210 157 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Vimu7g02210 157 PANTHER MADS BOX PROTEIN 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02210 Vimu-Chr7 19389419 19390206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02210 1 153 Type I MADS-box Gene Family AT5G60440 53.247 4.28e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g02210 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02210 - - gmx:100793705 223.787