LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g02205	ATGTCGTCTCTCAATCTTGTTTCTGGAGAAGACCCTATCCATATTTACTGTCCCAGTGAATTCCCACTGTACAACCTCAATAGTTCATTCCATTACAACCTCAGCCGTGTTCTGGGGTTGCTTTCCTCCGACGACGCTTCAAAGGCTGGTTTCTATAACACTTCCATAGGAGAAGAGCCAAACAAAGTGTACGGACAGTCACTGTGCAGAGGGGACATCGGCAACTCCACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCCAAGATATAATGAATAGGTGCAGGAGTGAAAATGCAATGATATGGTATAACCTTTGCCAAGTACGCTACTCCTTTCAGAGCTTTGATGTGGTGGCTTACACCGGAAAGTATCCGAAGCAGAATGACGAGGAGAAGAATGTTTCTGATCCTATTCGATTTAGAGAATACTTGACTTTTCTAATGAAGAATCTCTCTAACGAGGCTGCTTTCAATCCTGTCAAAAACATGTTTGCGGCAGGTGAAATTGACTATCCTGGGAAGAAGACAATTTATGGGTTGGTCCAATGTACGAGGGACATGTCCCTCCAAGACTGTAGCAGTTGTTTGAGTTCCGCCTTCACAGAAATCACTACATGCTGCTCCTACAGAGAAGGTGGGATTATTCTTAGTCGTACTTGCAATATGAGGTTCCAAATGTCTCAGTTCTTCAATGCTTCTTCTGCATATCTGTTGGTTTATCCAACTTCTTCAGTACGTGTGCCCACTGCACAGCAGATTTTCAATTCTAATGAAGAAATGAGTGAACGAACGCTATTACAAGAGTTGACTACCCCTAGGCATGTGGCAGTCACAGAAGAAGGTGATTTGATTAGTTCCGAAGAACTGTTGTTCATGACTTTAGCTTCAATCAGGGTTGCTACTGATGACTTTTCAGATACAAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTGGCAGATGGTAATGAAGTAGCAGTCAAAAGATTGTCGAGGAAGTCTTGGCAAGGCATAGAGGAATTTAAAAATGAAGTTGTGCTGATTGCGAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGTTGTGCCTTGGAGGGAGAAGAAAATAGAAAACATCTGACTGACTCATGTTCTTACTATGAAGATCCAGAAAAACGTTCAAAACTTGATTGGAAGACATACAATGGTATTATCAATGGCATAGCAAGAGGACTGCTTTATCTCCACGAGGAATCTCGCCTTAAAATCATTCACAGAGACTTAAAACCCAACAATGTGTTGTTAGACCACGAACTGTTGGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACCAAAAGAGTTGTGGGAACATAG	1395	0.4201	MSSLNLVSGEDPIHIYCPSEFPLYNLNSSFHYNLSRVLGLLSSDDASKAGFYNTSIGEEPNKVYGQSLCRGDIGNSTVCKECIEKASQDIMNRCRSENAMIWYNLCQVRYSFQSFDVVAYTGKYPKQNDEEKNVSDPIRFREYLTFLMKNLSNEAAFNPVKNMFAAGEIDYPGKKTIYGLVQCTRDMSLQDCSSCLSSAFTEITTCCSYREGGIILSRTCNMRFQMSQFFNASSAYLLVYPTSSVRVPTAQQIFNSNEEMSERTLLQELTTPRHVAVTEEGDLISSEELLFMTLASIRVATDDFSDTNKLGQGGFGAVYKGVLADGNEVAVKRLSRKSWQGIEEFKNEVVLIAKLQHKNLVRLLGCALEGEENRKHLTDSCSYYEDPEKRSKLDWKTYNGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELLAKISDFGMARIFSENQNAANTKRVVGT	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g02205	464	SMART	serkin_6	304	461	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02205	464	ProSiteProfiles	Protein kinase domain profile.	304	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02205	464	ProSiteProfiles	Gnk2-homologous domain profile.	122	229	IPR002902	-
	Vimu7g02205	464	FunFam	Os07g0541700 protein	381	464	-	-
	Vimu7g02205	464	Pfam	Protein kinase domain	305	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g02205	464	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	82	464	-	-
	Vimu7g02205	464	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	267	376	-	-
	Vimu7g02205	464	Gene3D	Transferase(Phosphotransferase) domain 1	376	464	-	-
	Vimu7g02205	464	Gene3D	Phosphorylase Kinase; domain 1	279	374	-	-
	Vimu7g02205	464	FunFam	Cysteine-rich receptor-like protein kinase 10	125	229	-	-
	Vimu7g02205	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	420	432	IPR008271	GO:0004672\|GO:0006468
	Vimu7g02205	464	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Vimu7g02205	464	SUPERFAMILY	Protein kinase-like (PK-like)	286	464	IPR011009	-
	Vimu7g02205	464	Pfam	Salt stress response/antifungal	132	225	IPR002902	-
	Vimu7g02205	464	Pfam	Salt stress response/antifungal	24	112	IPR002902	-
	Vimu7g02205	464	Gene3D	-	123	229	IPR038408	-
	Vimu7g02205	464	Gene3D	-	14	115	IPR038408	-
	Vimu7g02205	464	ProSiteProfiles	Gnk2-homologous domain profile.	11	115	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g02205	Vimu-Chr7	19370633	19373041	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g02205	11	464	Receptor kinase-like Gene Family	AT4G05200	41.767	6.43e-105	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vimu7g02205		Pkinase	9.2e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g02205	-		-	vun:114173511	792.341