Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02204 ATGCATTCCAAACCCATTCAATTGCTGCTTCTTTGCACTTTTGCTTTGTTTTCAGATGTTGTATTTGGTGATCCTCCGTATAGTATTTGTTCTTCAAGCGGCAGCTATGTAAACGGCAGTTCCTTTGAAAACAATTTAAACAACCTGCTTTCATCTTTATCCTCCAATGCTTCAGACTCCAAATTCTATAATACTTCTTATGGGATTGCCTCTGACAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTTCAAATGATAATTGCCAGAAATGCATCGCCACAGTAACAGAGGAAATTGTCAAACTGTGTCCTCAAGCAAAAGAAGCAATTGTGTGGGAAGAGTTGTGTCAGTTGCGTTATTCCAACATTAATTTCCTGGGTAGTTTGAATGTCACGGGGAACATTGGCTTAGATAATGTACAGAATCTTACAGAGCCAAAGAAGTTTGAGTCTGCTGTGAATGAGACACTAAGGAATCTTACTAAGGTAGCATCTTTTCATGTTTCGGCTAACATGTATGCTACTGGAGATGTCCCCTTTGGAGAGGAAACAATATTTGCTTTAGTGCAGTGCACCAGAGATTTAACTGCAAATGATTGTAATAGGTGCCTACAAAGTGCCATTGGAGATATACCAAGTTGTTGCTATGCCTCCATCGGGGCCAGAGTTCTGAGCCGTAGCTGTTATTTAAGGTATGAATTTTATGCATTTTATAATGGTGTCACAGGACCAACAGATTCTTCAAATGGCAAGAAAGAAAGCAAAATGGCTACCAATAATTTTTCTGATTTGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTGGTGATGGTAAAGAAGTAGCAATCAAGAGGTTGTCAGCTTGCTCCGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAGGAGAAGCTTCTTGTGTATGAATTTTTACACAATGGTAGTCTTGATGTCGTACTCTTTGATCCAATGCAACGTGCACAACTGGATTGGAGCAAACGCCTCGATATCATAAATGGAATAGCAAGAGGGATACTTTATCTTCACGAAGATTCTCGACTGAAAGTGATTCATAGAGACCTGAAAGCAAGTAATGTATTGTTGGACTATGACATGAATGCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTTCAGGAAATGAAGGTATATGGACATCCTTAACAGTAGCTGTATTTCCAAATTGCAGTGGGTATATGGCTCCAGAGTATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTGGGTTTGGTGTACTATTGCTTGAGATCATTACAGGGAAACGTAATGCCGGTTTCTATCACTCTAAAAACACTCCTAGCCTTCTGTCATATGTATGTGACATGTCAGATTCTGAACTTACTAAACGTGTAGCATGGAGTCTATGGAATGAAGGAAAGGGTATAGAACTAAGTGATTCCTTGTTGTATGATTCATGCCCTGGAGATGAGTTTTTGAGATACATGCAGATTGGACTACTGTGTGTTCAAGAAGATGCATATGATAGACCAACCATGTCTTCTGTTGTGATGATGCTGAAGAATGAATCAGCTACGCTTGGCCATCCTGAAAAACCACCTTTCTCTGTAGGGAGATTCAATGCCAATGACCCAGATTCACAAGAATGCTCAGTCAATTTCTTAACCATGTCAGATATATTACCCCAGTAA 1779 0.3952 MHSKPIQLLLLCTFALFSDVVFGDPPYSICSSSGSYVNGSSFENNLNNLLSSLSSNASDSKFYNTSYGIASDRVYGLYMCLDYISNDNCQKCIATVTEEIVKLCPQAKEAIVWEELCQLRYSNINFLGSLNVTGNIGLDNVQNLTEPKKFESAVNETLRNLTKVASFHVSANMYATGDVPFGEETIFALVQCTRDLTANDCNRCLQSAIGDIPSCCYASIGARVLSRSCYLRYEFYAFYNGVTGPTDSSNGKKESKMATNNFSDLNKLGQGGFGPVYKGKLGDGKEVAIKRLSACSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKLLVYEFLHNGSLDVVLFDPMQRAQLDWSKRLDIINGIARGILYLHEDSRLKVIHRDLKASNVLLDYDMNAKISDFGMARIFSGNEGIWTSLTVAVFPNCSGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNTPSLLSYVCDMSDSELTKRVAWSLWNEGKGIELSDSLLYDSCPGDEFLRYMQIGLLCVQEDAYDRPTMSSVVMMLKNESATLGHPEKPPFSVGRFNANDPDSQECSVNFLTMSDILPQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02204 592 FunFam Cysteine-rich receptor-like protein kinase 28 26 125 - -
Vimu7g02204 592 FunFam Cysteine-rich receptor-like protein kinase 10 135 238 - -
Vimu7g02204 592 CDD STKc_IRAK 268 551 - -
Vimu7g02204 592 FunFam Cysteine-rich receptor-like protein kinase 10 249 337 - -
Vimu7g02204 592 Pfam Salt stress response/antifungal 142 235 IPR002902 -
Vimu7g02204 592 Pfam Salt stress response/antifungal 30 123 IPR002902 -
Vimu7g02204 592 SUPERFAMILY Protein kinase-like (PK-like) 254 579 IPR011009 -
Vimu7g02204 592 ProSiteProfiles Gnk2-homologous domain profile. 132 238 IPR002902 -
Vimu7g02204 592 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 21 27 IPR002052 GO:0003676|GO:0008168|GO:0032259
Vimu7g02204 592 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 557 - -
Vimu7g02204 592 SMART serkin_6 262 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02204 592 ProSiteProfiles Protein kinase domain profile. 262 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02204 592 Pfam Protein tyrosine and serine/threonine kinase 266 482 IPR001245 GO:0004672|GO:0006468
Vimu7g02204 592 ProSiteProfiles Gnk2-homologous domain profile. 24 126 IPR002902 -
Vimu7g02204 592 Gene3D - 26 126 IPR038408 -
Vimu7g02204 592 Gene3D - 136 238 IPR038408 -
Vimu7g02204 592 Gene3D Phosphorylase Kinase; domain 1 249 337 - -
Vimu7g02204 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Vimu7g02204 592 Gene3D Transferase(Phosphotransferase) domain 1 338 559 - -
Vimu7g02204 592 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02204 Vimu-Chr7 19365361 19367810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02204 30 592 Receptor kinase-like Gene Family AT4G11490 37.120 6.90e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu7g02204 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02204 - - gmx:102669364 926.776