Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02197 ATGACGGTGCAGATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATAACTCTTGAGGTGGAGAGTTCCGACACCATCGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGTTTGATCTTCGCCGGGAAGCAACTGGAGGATGGTCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCCACCCTGCATCTGGTCCTCCGTCTACGTGGAGGAATGCAGATATTCGTTAAGACTCTTACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCAGACACCATTGACAACGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCAACCCTTCACCTTGTGCTCCGACTCAGGGGTGGGATGCAGATTTTTGTGAAGACCTTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGTTCTGACACTATCGACAATGTGAAGGCGAAAATTCAGGACAAGGAGGGAATTCCACCGGACCAGCAGAGGCTGATCTTCGCAGGGAAGCAGTTGGAAGATGGGAGGACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTTCGTGGTGGTTTTTAA 702 0.5114 MTVQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02197 233 ProSiteProfiles Ubiquitin domain profile. 5 80 IPR000626 GO:0005515
Vimu7g02197 233 PRINTS Ubiquitin signature 15 35 IPR019956 -
Vimu7g02197 233 PRINTS Ubiquitin signature 36 56 IPR019956 -
Vimu7g02197 233 PRINTS Ubiquitin signature 57 78 IPR019956 -
Vimu7g02197 233 ProSiteProfiles Ubiquitin domain profile. 157 232 IPR000626 GO:0005515
Vimu7g02197 233 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Vimu7g02197 233 SUPERFAMILY Ubiquitin-like 156 232 IPR029071 -
Vimu7g02197 233 Gene3D - 81 156 - -
Vimu7g02197 233 Gene3D - 157 233 - -
Vimu7g02197 233 Gene3D - 1 80 - -
Vimu7g02197 233 SUPERFAMILY Ubiquitin-like 5 80 IPR029071 -
Vimu7g02197 233 FunFam Polyubiquitin 3 5 80 - -
Vimu7g02197 233 CDD Ubl_ubiquitin 5 80 - -
Vimu7g02197 233 PANTHER UBIQUITIN 81 160 - -
Vimu7g02197 233 FunFam Polyubiquitin 3 81 156 - -
Vimu7g02197 233 ProSitePatterns Ubiquitin domain signature. 31 56 IPR019954 -
Vimu7g02197 233 CDD Ubl_ubiquitin 81 156 - -
Vimu7g02197 233 CDD Ubl_ubiquitin 157 232 - -
Vimu7g02197 233 SMART ubq_7 5 76 IPR000626 GO:0005515
Vimu7g02197 233 SMART ubq_7 81 152 IPR000626 GO:0005515
Vimu7g02197 233 SMART ubq_7 157 228 IPR000626 GO:0005515
Vimu7g02197 233 FunFam Polyubiquitin 3 157 232 - -
Vimu7g02197 233 ProSitePatterns Ubiquitin domain signature. 183 208 IPR019954 -
Vimu7g02197 233 ProSitePatterns Ubiquitin domain signature. 107 132 IPR019954 -
Vimu7g02197 233 Pfam Ubiquitin family 7 78 IPR000626 GO:0005515
Vimu7g02197 233 Pfam Ubiquitin family 159 230 IPR000626 GO:0005515
Vimu7g02197 233 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Vimu7g02197 233 SUPERFAMILY Ubiquitin-like 80 156 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02197 Vimu-Chr7 19315227 19317860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02197 5 81 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.54e-49 157