Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02196 ATGGCTACCCAACAATCTCTGTTAGAGAAGCCTAAAAAGCCCGTTTCAAAAACTATCTGCTTACTCCTTTCTGTAATTGCAGTTCTAAGTTCATCAGCTTTTCTTGCTTCTTATATCTTCAAACCATCCTCAGTCTTCAACGATTCCTCCCATAACCATGTCTGTGATCACGCACTTGATACTGCATCCTGCTTAGCACATATCTCAGAAGTAACCCAAACTCACAGGTTCACCACAGCAAAACGCCAGAAATTCGATTTGCTCAAAACGTTCCTGATAAAACACACCTCACATATTGAAAAGGCCATGGGCGAAACCAATGCTATCAGACTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGAAGGATTGTGTGGATCTGATGGAGTTGTCCTTGGACAGAGTTTGGAACTCGATGTTAGCACTGACAAAACAGACCACCGAGTCGCATCAAGATGCACACACGTGGCTAAGTAGCGTGCTAACTAATCATGCAACTTGCTTGGACGGATTAGAGGGTGCGGCTCGCAGTGTTATGGAGGATGAACTTGAGGACTTGAAATCTAGGTCACGAACCGCTCTGGCGATTCTTGTTGAGACGGTTTTGCCACCGAAGGTTGAACAGATAATTGACGAACCCCTTAATGGGAACTTTCCCTCATGGGTTAGCAGCAGGGATCGGAGGCTTTTGGAGAGTGGGGTTGGGGACGTCAAGGCCAATGTCGTGGTGGCTCAGGATGGGAGTGGCAAGTTTAAGACTGTCACTGAGGCTGTGGCATCCGCACCGGACAACGGCAATACAAGGTACGTCATTTATGTGAAAAAGGGAACATATAAAGAACATGTTGAAATTGGTAAGAAGAAGAAAAACGTCATGCTCGTCGGTGACGGTATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACAACAACCTTTAACAGTGCCACCGTTGCTGCTGTGGGTGATGGATTTATAGGTCAAGACATATGGTTTCAGAACACAGCGGGAGCGGCGAAACACCAAGCGGTGGCTCTTCGCGTGGGCGCCGACCAATCTGTGATAAACCGTTGTCGCATAGATGCGTTTCAAGACACTCTCTACGCACACTCCAACAGGCAGTTTTACAGAGACTCTGTCATCACTGGGACCATTGACTTCATTTTCGGAAACGCCGCTGTTGTGTTCCAAAAGTGCAACCTGGTGGCCCGAAAGCCCATGAGTAACCAAAAGAATATGGTGACGGCTCAAGGAAGAGAAGATCCAAACCAAAATACGGGAACTTCAATTCAACAATGTAACCTAACACCGAGTTCAGATCTTAAGCCTGTTGTGGGTTCCATCAAAACTTATCTGGGTCGACCTTGGAAGAAGTATTCAAGGACTGTTATCATGCAGTCGTCGATAGACAGTCATATTGACCCAACAGGATGGGCAGAATGGGATGCCCAGAGTAAGGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAACAGTGGAGCAGGTGCTGGAACTAGCAATAGAGTAAATTGGCCTGGTTACCATATCATCACAAGCGCAGCAGAAGCGAGCAAGTTCACAGTAACACAACTCATCCAAGGAAATGTTTGGTTGAAGAACACTGGGGTCAACTTCATTGAAGGTCTCTAA 1665 0.4631 MATQQSLLEKPKKPVSKTICLLLSVIAVLSSSAFLASYIFKPSSVFNDSSHNHVCDHALDTASCLAHISEVTQTHRFTTAKRQKFDLLKTFLIKHTSHIEKAMGETNAIRLRVNNPREEAALKDCVDLMELSLDRVWNSMLALTKQTTESHQDAHTWLSSVLTNHATCLDGLEGAARSVMEDELEDLKSRSRTALAILVETVLPPKVEQIIDEPLNGNFPSWVSSRDRRLLESGVGDVKANVVVAQDGSGKFKTVTEAVASAPDNGNTRYVIYVKKGTYKEHVEIGKKKKNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIGQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSIKTYLGRPWKKYSRTVIMQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSNRVNWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02196 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Vimu7g02196 554 NCBIfam pectinesterase inhibitor domain 32 197 IPR006501 GO:0004857
Vimu7g02196 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vimu7g02196 554 CDD PMEI-like_4 57 199 - -
Vimu7g02196 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Vimu7g02196 554 Pfam Plant invertase/pectin methylesterase inhibitor 52 197 IPR006501 GO:0004857
Vimu7g02196 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vimu7g02196 554 PANTHER PECTINESTERASE 26 544 - -
Vimu7g02196 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Vimu7g02196 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vimu7g02196 554 FunFam Pectinesterase 235 554 - -
Vimu7g02196 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 200 IPR035513 -
Vimu7g02196 554 Gene3D - 235 554 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02196 Vimu-Chr7 19307077 19308918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02196 3 554 Carbohydrate Esterase AT1G11580 57.473 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02196 K01051 - gmx:100815836 905.59