Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02195 ATGGCTATCCAACAATCTCTGCTAGACAAGCCTAGAAATTCTATTTCCAAAACAATCTGTTTAGTCTTTTCTGTAGCCGCTGTCATATGTTCATCAGCCTTTGTTGGTTCCTATCTCATCAAATCCAGTTCCTTCCTTAACCAGTCCCCTCTTCAACATCTCTGTCGCCATGCACCTGATAATCCATCATGCTTGGCACATGTCTCAGAAGTGGCTCAAGATCCCATCTTGACCACCACAAAAGACTACAACTTGAATTTGTTCCACTCTTTCTTAATGAAATCCACCTCTCACATTCAGAGAGTTATGAACACAGCCAGTTCCATCAAACTTAGGATTAACAATCCCCGAGAGGAAGCAGCTTTGAACGACTGTGTGGAGCTGATGGACTTATCCATCAACAGAGTTTGGGACTCGATCGTGACTCTAACGAAAGAAACCGATGAGTCACAGCAAGATGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGCAACTTGTTTGGATGGGTTAGAGGGGACAGCTCGAGCCCTTATGAAGGATGAACTCGAGGACTTGAAATCCAGAGCGAAAACCACTCTGGCCATGTTCGTTGCTGTTTTACCTCAGAGGGTTGAACCAATTTTCGATGAACCACTGAACGGGGAGTTTCCCTCATGGTTGAGCAGCAAGGATAGGAAGCTTTTGGAGTCAAGTGCTTTGAACATCAATGCCAACGTTGTGGTGGCCAAGGATGGGAGTGGCAAGTTTAAGACTGTAGCTCAGGCTGTGGCATCTGCACCTGATAACGGGAAGACAAGGTATGTTATTTACGTGAAAAAAGGAACATATAAAGAGAATGTTGAAATCAGTAGTAAGAAGACGAACGTGATGCTGGTTGGAGATGGTAAGGATGTAACTATAATTACTGGCAGCTTGAATTATATTGACGGAACCACCACGTTTAAGTCCGCCACTGTAGCTGCTGTGGGGGATGGATTTATAGGTCAAGACATATGGTTCCAGAACACTGCAGGTCCACAGAAGCACCAAGCAGTGGCTCTTCGAGTAGGTGCGGATCGATCCGTCATAAACCGATGCCGCGTTGATGCCTTCCAAGACACTCTCTATGCCCACTCTAACAGGCAGTTTTACAGAGACTCCTATATCACAGGCACCGTTGATTTCATATTTGGAAATGCAGCGGTTGTGTTTCAAAAGTGCAACATTGCGGCCCGAAAGCCCATGAGTAACCAGAAGAACATGGTGACGGCCCAGGGACGAGAAGATCCAAACCAGAGCACAGGAACTTCGATTCAACAATGTAACATAATACCAAGTTCGGATCTGAAGCCTGTGGTAGGGTCCATCAAGACTTTCCTAGGGCGGCCATGGAAGAAGTACTCGAGAAGCGTTGTGATGCAGTCCACAATAGAGAGCCATGTTGACCCAACAGGATGGGCAGAGTGGGATGCCCAGAGTAAGGACTTTTTGAACACGTTGTATTATGGAGAGTACATGAACAAAGGAGCTGGTGCTGGTACCAGCAAGAGAGTGAAGTGGCCTGGTTACCATATCATCACAAGTGCAGCAGAAGCCAGCAAGTTCACGGTAACACAGCTTATTCAAGGAAATGTTTGGCTGAAGAACACCGGGGTCAACTACATTGAAGGCCTCTAA 1662 0.4627 MAIQQSLLDKPRNSISKTICLVFSVAAVICSSAFVGSYLIKSSSFLNQSPLQHLCRHAPDNPSCLAHVSEVAQDPILTTTKDYNLNLFHSFLMKSTSHIQRVMNTASSIKLRINNPREEAALNDCVELMDLSINRVWDSIVTLTKETDESQQDAHTWLSSVLTNHATCLDGLEGTARALMKDELEDLKSRAKTTLAMFVAVLPQRVEPIFDEPLNGEFPSWLSSKDRKLLESSALNINANVVVAKDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENVEISSKKTNVMLVGDGKDVTIITGSLNYIDGTTTFKSATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADRSVINRCRVDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKCNIAARKPMSNQKNMVTAQGREDPNQSTGTSIQQCNIIPSSDLKPVVGSIKTFLGRPWKKYSRSVVMQSTIESHVDPTGWAEWDAQSKDFLNTLYYGEYMNKGAGAGTSKRVKWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNYIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02195 553 FunFam Pectinesterase 3 52 201 - -
Vimu7g02195 553 FunFam Pectinesterase 234 553 - -
Vimu7g02195 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Vimu7g02195 553 CDD PMEI-like_4 63 201 - -
Vimu7g02195 553 NCBIfam pectinesterase inhibitor domain 26 197 IPR006501 GO:0004857
Vimu7g02195 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 201 IPR035513 -
Vimu7g02195 553 PANTHER PECTINESTERASE 26 543 - -
Vimu7g02195 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Vimu7g02195 553 Gene3D - 234 553 IPR012334 -
Vimu7g02195 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 198 IPR035513 -
Vimu7g02195 553 SUPERFAMILY Pectin lyase-like 237 552 IPR011050 -
Vimu7g02195 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vimu7g02195 553 Pfam Plant invertase/pectin methylesterase inhibitor 51 196 IPR006501 GO:0004857
Vimu7g02195 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02195 Vimu-Chr7 19299875 19301652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02195 5 553 Carbohydrate Esterase AT1G11580 56.708 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02195 K01051 - gmx:100815836 949.118