Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02194 ATGGCAACACACCAATCTCTGTTAGACAACCCTAGAAAATCCGTTTCCAAAACTACATGCTTAATCTTCTCTGTAGCTGTTGTGCTAACTTCATCAGCTCTTATTGCTTCTTATGTCACAAAACCCTCGCCCTTATTCAACCACGGCTTCTCTCACCGTGTTTGTGATCATGCAATTGATCCTTCAGCCTGCTTGGCACATGTCATGGAAGTGGTACAAGATCCGATGTTCGCTGCCACACAAAACCACAGATTCGGATTGCTGCAATCCTTTTTAATGAAATCCACCTCACACATTGAGAGAGTGATAGGGGCAGCCAACGCTATGAGGGTGAGGATGAACGATCAAGGAGAAGAAGCCGCCATGCGGGATTGCGTGGAGCTGATGGAGTTGTCCTTGGACAGAGTTTGGGACTCAAAGGCCAGCCTAACCAAAGGGACGACTGATTCGGCGCAAGATGCCCACACTTGGCTAAGCAGCGTGCTCACTAATCATGTAACTTGCTTGGACGGACTGAAGGGGCGAGTTCGACGGCTGATGGAGGCAGAGGTTCAGGACTTGATCTCGAGAGCAAGAAGCTCTTTAGCCATGTTCGTTGCTGTTTTGCCTCCAAATCCAGAGGTTGAAGTCGTGTCGCTAAATGGGAAGTTTCCGTCATGGGTGAGAAGCAAGGATCGGAGGCTGTTAGAGTCTTCGGCCGGAGAGATCAAGGCGGACGTTGTGGTGGCTCAGGACGGGACTGGTGACTTTTTACTGTTGCTGAAGCTTTGGCCACGGTACCCAATAAAAGCACGAAGAGGTATGTTATTCATGTGA 816 0.4926 MATHQSLLDNPRKSVSKTTCLIFSVAVVLTSSALIASYVTKPSPLFNHGFSHRVCDHAIDPSACLAHVMEVVQDPMFAATQNHRFGLLQSFLMKSTSHIERVIGAANAMRVRMNDQGEEAAMRDCVELMELSLDRVWDSKASLTKGTTDSAQDAHTWLSSVLTNHVTCLDGLKGRVRRLMEAEVQDLISRARSSLAMFVAVLPPNPEVEVVSLNGKFPSWVRSKDRRLLESSAGEIKADVVVAQDGTGDFLLLLKLWPRYPIKARRGMLFM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02194 271 NCBIfam pectinesterase inhibitor domain 22 176 IPR006501 GO:0004857
Vimu7g02194 271 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 198 IPR035513 -
Vimu7g02194 271 CDD PMEI-like_4 57 201 - -
Vimu7g02194 271 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vimu7g02194 271 Pfam Plant invertase/pectin methylesterase inhibitor 52 189 IPR006501 GO:0004857
Vimu7g02194 271 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 201 IPR035513 -
Vimu7g02194 271 PANTHER PECTINESTERASE 28 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02194 Vimu-Chr7 19289612 19290427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02194 3 250 Carbohydrate Esterase AT1G11580 34.109 3.59e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02194 K01051 - gmx:100815836 308.531