Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02193 ATGGCGGCGGTTGGGGATGGGTTCATAGCCCAAGACATTTGGTTTAGAAATTGTGCAGGCCCAGAAAAGCACCAGGCAGTTGCACTTCGCGTGGGCGCTGATCAATCCGTGATAAATCGTTGCCGCGTGGACGCATATCAAGACACGCTCTACGTCCATTCCAACAGACAGTTCTACCGCGACTCCTACGTTAAGGGCACCGTTGACTTCATCTTTGGAAACGCAGCTGCAGTCTTCCAGAACTGTACGCTGGAGGCCCAAAAGCCCATGGAAGGTCAGAAAAACATGGTGACAGCCCAATCACGAACAGATCCAAACCAAAACACAGGAATTTCAATTCAACAGTGTAACATCTCCCCCAGTGAGGATCTTAGGCCCGTGATAAAGTCTTTCAAAACATATTTGGGCCGCCCGTGGCAGAACTTCTCGAGGACTGTTGTTATGCAATCCTTTCTGGACAAGCATATTGACCCAGAGGGATGGTCCGAATGGGATGACAAACATAAATGCTATTTGGAAACCCTGTATTATGGAGAGTACATGAACAGAGGACCTGGTGCCGGTACCGGTGGAAGAGTGAATTGGACCGGTTACCACATCATCACAAGTGCAGCCGTGGCCAACCAGTTCACGGTGAAAAACCTCATCCAAGGCGATGTTTGGTTGAAGAACAGTGGGGTCAACTACATTGAAGGTCTATAA 702 0.4915 MAAVGDGFIAQDIWFRNCAGPEKHQAVALRVGADQSVINRCRVDAYQDTLYVHSNRQFYRDSYVKGTVDFIFGNAAAVFQNCTLEAQKPMEGQKNMVTAQSRTDPNQNTGISIQQCNISPSEDLRPVIKSFKTYLGRPWQNFSRTVVMQSFLDKHIDPEGWSEWDDKHKCYLETLYYGEYMNRGPGAGTGGRVNWTGYHIITSAAVANQFTVKNLIQGDVWLKNSGVNYIEGL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02193 233 ProSitePatterns Pectinesterase signature 2. 64 73 IPR033131 -
Vimu7g02193 233 Gene3D - 1 233 IPR012334 -
Vimu7g02193 233 FunFam Pectinesterase 4 1 233 - -
Vimu7g02193 233 PANTHER PECTINESTERASE 2 223 - -
Vimu7g02193 233 SUPERFAMILY Pectin lyase-like 3 232 IPR011050 -
Vimu7g02193 233 Pfam Pectinesterase 1 219 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02193 Vimu-Chr7 19288683 19289394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02193 1 233 Carbohydrate Esterase AT1G11580 66.094 1.00e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02193 K01051 - gmx:100815836 383.645