Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02192 ATGTTGCAGTGTGACTTATTCTTCACCCATTTTTGGAGTTTCCATGCACTTCACTTCCTTTCTCTACAGAACACTACTTCTCACTCTCTATATCACCACATCCATTTCTCTTTTCTTCTTCGACCTCGCAAAGAAGAGGGCATGGCGAACACGTCATTATCATCAGTAGCAGCAGCGATAGTAGTATTGTTGGTTTCATGTGGAATATTAATTCAGGAGTGCGAGGGCCAGGGCCAGGGCCAGCAACCCAAGGCTTTGCCTCCAGCAGGGGAAACTTGTAACGGGATTTTCATTTCCTATGACTTTCTCAAACGAACAAAAGAATACCCTCACGTGAAGAATGTGACGGCACAGTCCTGGGCCTTCAGTTCCACCGCATCAGTTCTCAACACAGGTAAAGAAGTATTTAAGGCATGGAAGTTGTTCATAGAGTTTCAACATGACGAGATTCTTGTCTCCGTCAGCGGAGGCAATATAGAAGAGGCAACTGAGTTCCCCGCTTCGGTAGGAAATGGTACTACCTTTGTCGGAGCTTCTCAGCCAGACTTGGATAGCGCAATCAACACAGCTCAAGATTTAACCCAGATCCAAGCCGTCATCGACCTTACCGGTACCCAGTTTGGAGTAAAGCCCCCTACGGTTCCTATGCCAAAAACCATCAAGTTGGTAAACGATGGTTACAAATGCCCCAAACCAACTACCCACAAGAGTTCCATGTATGCATGCTGCAAAAAGGACCCTAAAGCAAAGATTTCAGTTGCTAAGAAGACAAAATTCTTGGCACGGCAAAAAGGGGATCTTCTGATATCCTATGACGTTACTCAAGTGTATGACGATAATTATTTGGTTCAGGTGACGATGGATAACGAACACTTTTTGGGACGGTTGGATCATTGGAACTTGACGTGGGAGTGGACAAGAGGGGAATTTATATACTCCATGAAAGGTGCCTTCACACGTGAGATAGAGCCCCTAGGTTGCATCAATGGTGAGGCAGGAAAGTATTACGCGGGCTTGGATTTCTCTAAAGTGCTTAACTGTCAGAAGAATCCTATAGTGAGTGATTTGCCTTCAGAGAAATATAACGACAGTGAACTTGGAAAGATACCTAACTGTTGCAAAGACGGAAATCTTTTACCCATCCTTATGGACCCTAGCAAATCCAAGTCTACTTTTACAATGCAAGTGTACAAAATTCCACCTGATTTAAACAAAACGGCAATTTACCCTCCTGAGAAATGGCAAATAACGGGTATTCTGAACCCACACTACAGATGTGGGTTACCCAGAAGAGTGGAGCCTGTTCGATTTCCAGACCCCAGGGGACTCGAAGCAGAGGTTATTGCCATTTCAAGTTGGCAAATAGTCTGCACTATCACTAAGCCAACCAGAAGGAACACTCGCTGTTGTGTTTCTTTCTCCTCTTATTACAATGACTCCGTAGTCCCTTGCAACACCTGTGCCTGTGGCTGTGATTCTACAAAGACCAAAAAATGCAATCCCAATTCTCCGGCAATGCTTCTTCCTGCAGAAGCTCTTCTTATACCCTTTGAAAACAGGTCGGCAAAGACGGTTGCTTGGGCCAAAATGAAGCATTTTACGATTCCCAAAAGATTACCCTGTGGTGACAACTGCGGAGTCAGCATAAACTGGCATGTTGTTTCCGACTACAAAGGTGGGTGGAGTGCTCGAATCACTATGTTCAACTGGATGACTACCCAGTTTGAGAATTGGTTCACCGCCCTCCAATTCAAGAAGACTCCTCGCGGCTACCAAGCAACATATTCTTTTAATGCCACAACCATTCCAAAGCTCAACCATACTATTTTCTTGCAAGGATTTCTCGGAGCAAACTATCTTATAGCTTTGGACAACAAATCAAACCCACATGTTCCCGGAAAACAACAATCCGTTATCTCCTTTACCAAGAAGTATTCACCAAATATCAAAATTGCAAAAGGAGATGGGTTCCCTTCTAAGGTCATTTTTAACGGCGAAGAGTGTTCCCTTCCTACCAGATTCCCTGTCAAAAGTGGAAACCAACCTAATCTTGTTGTAGATTTAGCATACCAACTCTTGTTTTTCGCTTTAGCTTTTATAATCACTCAAGTTCTGTAA 2118 0.4391 MLQCDLFFTHFWSFHALHFLSLQNTTSHSLYHHIHFSFLLRPRKEEGMANTSLSSVAAAIVVLLVSCGILIQECEGQGQGQQPKALPPAGETCNGIFISYDFLKRTKEYPHVKNVTAQSWAFSSTASVLNTGKEVFKAWKLFIEFQHDEILVSVSGGNIEEATEFPASVGNGTTFVGASQPDLDSAINTAQDLTQIQAVIDLTGTQFGVKPPTVPMPKTIKLVNDGYKCPKPTTHKSSMYACCKKDPKAKISVAKKTKFLARQKGDLLISYDVTQVYDDNYLVQVTMDNEHFLGRLDHWNLTWEWTRGEFIYSMKGAFTREIEPLGCINGEAGKYYAGLDFSKVLNCQKNPIVSDLPSEKYNDSELGKIPNCCKDGNLLPILMDPSKSKSTFTMQVYKIPPDLNKTAIYPPEKWQITGILNPHYRCGLPRRVEPVRFPDPRGLEAEVIAISSWQIVCTITKPTRRNTRCCVSFSSYYNDSVVPCNTCACGCDSTKTKKCNPNSPAMLLPAEALLIPFENRSAKTVAWAKMKHFTIPKRLPCGDNCGVSINWHVVSDYKGGWSARITMFNWMTTQFENWFTALQFKKTPRGYQATYSFNATTIPKLNHTIFLQGFLGANYLIALDNKSNPHVPGKQQSVISFTKKYSPNIKIAKGDGFPSKVIFNGEECSLPTRFPVKSGNQPNLVVDLAYQLLFFALAFIITQVL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02192 705 PANTHER COBRA-LIKE PROTEIN 7 58 701 - -
Vimu7g02192 705 Pfam COBRA-like protein 281 460 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02192 Vimu-Chr7 19286083 19288392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02192 87 690 COBRA Gene Family AT3G20580 56.158 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02192 - - gmx:100799716 1009.21